Sequence 1: | NP_001247206.1 | Gene: | Gfrl / 3346162 | FlyBaseID: | FBgn0262869 | Length: | 1279 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001017996.1 | Gene: | gfra2a / 405794 | ZFINID: | ZDB-GENE-040630-1 | Length: | 495 | Species: | Danio rerio |
Alignment Length: | 400 | Identity: | 87/400 - (21%) |
---|---|---|---|
Similarity: | 126/400 - (31%) | Gaps: | 109/400 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 KILSCCLSLWVVLFGGALHLAQGSEFPERECCDLTTTSTVGPLPMPPAALPTDKSLSSATTALET 74
Fly 75 DLAIGRSGSTIKGVVAILN-------CILARQLCFEDPSCSAILEIIPRVC------GPIPVSCS 126
Fly 127 T---VTVTKCQAALRTLQAFQFFRPT----------CLCKEPGMDPDCNHFRDFLFDHPCGFVLK 178
Fly 179 KAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHCKVRD---NKCKMENRDACHDSWT--- 237
Fly 238 --------------NLRLSPMFGCICP-NNHMKKRCDRIFNIVNHNPCVDRLI--FFPNGLPKLK 285
Fly 286 QPRP---KAKPRPKP---------KPKSKPKPRQRHHGMNGTELMTNNIEYHDE--PNGLSDPED 336
Fly 337 EANETVDEDP 346 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Gfrl | NP_001247206.1 | GDNF | 94..173 | CDD:280506 | 21/97 (22%) |
GDNF | 193..270 | CDD:197975 | 19/97 (20%) | ||
GDNF | 641..727 | CDD:197975 | |||
GDNF | 751..832 | CDD:280506 | |||
gfra2a | NP_001017996.1 | GDNF | 54..126 | CDD:197975 | 4/10 (40%) |
GDNF | 184..273 | CDD:280506 | 21/97 (22%) | ||
GDNF | 283..379 | CDD:280506 | 19/97 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170584246 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10269 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.940 |