Sequence 1: | NP_001247206.1 | Gene: | Gfrl / 3346162 | FlyBaseID: | FBgn0262869 | Length: | 1279 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_034409.1 | Gene: | Gfra1 / 14585 | MGIID: | 1100842 | Length: | 468 | Species: | Mus musculus |
Alignment Length: | 364 | Identity: | 78/364 - (21%) |
---|---|---|---|
Similarity: | 120/364 - (32%) | Gaps: | 105/364 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 618 YQS--GQDVEVDLSTE--------------IIKQHFQ--------STCHTALDTCREDPSC---- 654
Fly 655 SSSLQPMLTHCELHRCNRNACMSSLQAFYKGPHEDLNLDIAFCLCKKTSSQQNGNGNRHDMCMIA 719
Fly 720 QEKLHPVCAQRPPDNSNPASSNGIYYHPPPACHVVADSCKEDRECRLKLEYYEQACAVD--SVTK 782
Fly 783 KCAGRPSGCRTAMIGILGTMLRTT--------------CACQGTDPQHLYQCVGWRRLLWMNPCV 833
Fly 834 VEAQKDFHMKRLAELGFLTTTTTTTTTTTTTTTTTTTRAPPPPPPPTTTTTTTTSMQPRQTPRKP 898
Fly 899 A-------THIF---KDVITAKEKSEPTSVEHNYLDPPD 927 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Gfrl | NP_001247206.1 | GDNF | 94..173 | CDD:280506 | |
GDNF | 193..270 | CDD:197975 | |||
GDNF | 641..727 | CDD:197975 | 18/89 (20%) | ||
GDNF | 751..832 | CDD:280506 | 22/96 (23%) | ||
Gfra1 | NP_034409.1 | Repetitive region | 25..113 | 3/5 (60%) | |
GDNF | 29..111 | CDD:197975 | 3/3 (100%) | ||
Repetitive region | 150..238 | 20/98 (20%) | |||
GDNF | 154..233 | CDD:197975 | 18/89 (20%) | ||
Repetitive region | 239..342 | 24/119 (20%) | |||
GDNF | 243..337 | CDD:367047 | 22/96 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167840077 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10269 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.940 |