DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gfrl and gfra4a

DIOPT Version :10

Sequence 1:NP_001247206.1 Gene:Gfrl / 3346162 FlyBaseID:FBgn0262869 Length:1279 Species:Drosophila melanogaster
Sequence 2:NP_001116530.2 Gene:gfra4a / 100144564 ZFINID:ZDB-GENE-080402-10 Length:437 Species:Danio rerio


Alignment Length:391 Identity:76/391 - (19%)
Similarity:123/391 - (31%) Gaps:112/391 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   571 MHG---VPSYPFN--ISGFHQRHMAAAAADNEPFDIIDTGLGYGGNGNAGVYYQSGQDVEVDLST 630
            :||   |.:||:.  ..||....:|:.||::                            ||.::|
Zfish   106 LHGLSLVENYPYEPVERGFDYVRLASIAAES----------------------------EVGMTT 142

  Fly   631 EIIKQHFQSTCHTALDTCREDPSCSSSLQPMLTHC-----ELHRCNRNACMSSLQAFYKGPHEDL 690
                   .:.|..|...|..|.:|.......::.|     ....|||..|..:|:.|:.....|.
Zfish   143 -------VNRCLDAAKACNVDETCQKLRTEYVSACIAPSARAGTCNRARCSKALRKFFDRVPPDY 200

  Fly   691 NLDIAFCLCKKTSSQQNGNGNRHDMCMIAQEKLHPVCAQRPPDNSNPASSNGIYYHPPPACHVVA 755
            ..::.||.|..|:                       ||:|......||.|  ......|.|.|..
Zfish   201 THELLFCPCSDTA-----------------------CAERRRQTIVPACS--FEEREKPNCLVQL 240

  Fly   756 DSCKEDRECRLKLEYYEQACAVDSVTKK-CAGRPSG-CRTAMIGILGTMLR-------------- 804
            .:|:.|..|:.:...::..|....:|.. |.....| |..|..|::|:::.              
Zfish   241 RACEADYVCKSRWAQFQHDCQPSELTASGCQQENYGACLIAYTGLIGSIITPNYLDNSTSNVGPW 305

  Fly   805 TTCACQGTDPQHLYQCVGWRRLLWMNPCVVEAQKDFHMKRLAELGFLTTTTTTTTTTTTTTTTTT 869
            .:||..|....   ||..:......|.|:..|        ::..|..|...:.|.....:.|.|.
Zfish   306 CSCAASGNFRD---QCNHFLSHFHDNNCLKNA--------ISAFGNDTDLKSATNQAPGSNTNTY 359

  Fly   870 TRAPPPPPPPTTTTTTTTSMQPRQTPRKPATHIFKDVITAKEKSEPTSV-EHNYLDPPDSIPLPS 933
            ....|......||||...:.:..|...:|              ..||.: |.:.|....::|.|.
Zfish   360 NHILPVTSTEPTTTTNGAATETEQNLLRP--------------QMPTQMNERDRLWGDSTLPSPD 410

  Fly   934 V 934
            :
Zfish   411 L 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GfrlNP_001247206.1 GDNF 94..173 CDD:460537
GDNF 193..270 CDD:460537
GDNF 641..727 CDD:197975 17/90 (19%)
GDNF 751..832 CDD:460537 19/96 (20%)
gfra4aNP_001116530.2 None
Blue background indicates that the domain is not in the aligned region.

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