DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr4 and rst

DIOPT Version :9

Sequence 1:NP_001014616.2 Gene:dpr4 / 3346160 FlyBaseID:FBgn0053512 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001284835.1 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster


Alignment Length:260 Identity:59/260 - (22%)
Similarity:94/260 - (36%) Gaps:72/260 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LLLFLDCGMVGGEVPPHYWETPYSQPYFDNSSRR------EVTATVGQAALLHCRVRNLGDRAVS 78
            |||....|||            .|.||....::|      :.||.||....|.|||.| ....:.
  Fly     8 LLLATIVGMV------------RSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVIN-KQGTLQ 59

  Fly    79 WIR-------KRDLHILTVGILTYTNDQRFQSLHSEGSDEWTLRISSPQPRDSGTYECQVSTEPK 136
            |.:       .|||          :..:|:..:.|:...:::|.|......|...|:||||..|:
  Fly    60 WTKDDFGLGTSRDL----------SGFERYAMVGSDEEGDYSLDIYPVMLDDDARYQCQVSPGPE 114

  Fly   137 ISQGFR-----LNVVV--SRAKILGNAELFIKSGSDINLTCLAMQSPVPPSFIYWYKGKRVMNYS 194
            .....|     |.|:|  ...||.....::......:.:.|:::... |.:.|.|..|..     
  Fly   115 GQPAIRSTFAGLTVLVPPEAPKITQGDVIYATEDRKVEIECVSVGGK-PAAEITWIDGLG----- 173

  Fly   195 QRGGINVITE-------------RSTRTSKLLIAKATPADSGNYTC-SPSSSD----SASVVVHV 241
                 ||:|:             |.|..|.|.:.......:.|::| :.:::|    ||.:.|.|
  Fly   174 -----NVLTDNIEYTVIPLPDQRRFTAKSVLRLTPKKEHHNTNFSCQAQNTADRTYRSAKIRVEV 233

  Fly   242  241
              Fly   234  233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr4NP_001014616.2 V-set 53..146 CDD:284989 27/110 (25%)
IG_like 53..145 CDD:214653 27/109 (25%)
ig 153..227 CDD:278476 13/86 (15%)
IG_like 161..>227 CDD:214653 13/78 (17%)
rstNP_001284835.1 IG_like 34..130 CDD:214653 27/106 (25%)
Ig 42..114 CDD:299845 20/82 (24%)
C2-set_2 135..225 CDD:285423 17/100 (17%)
Ig_3 265..329 CDD:290638
I-set 346..420 CDD:254352
Ig 360..425 CDD:299845
Ig5_KIRREL3-like 428..524 CDD:143235
IG_like 435..524 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.