DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr4 and Dscam

DIOPT Version :9

Sequence 1:NP_001014616.2 Gene:dpr4 / 3346160 FlyBaseID:FBgn0053512 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_038943864.1 Gene:Dscam / 171119 RGDID:619992 Length:2034 Species:Rattus norvegicus


Alignment Length:267 Identity:65/267 - (24%)
Similarity:108/267 - (40%) Gaps:54/267 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 QPYFDNSSRREVTATVGQAALLHCRVRNLGDRAVSWIRKRDLHILTVGILTYTNDQRFQSLHSEG 108
            ||.....|.|:|.::||....|.|.|....|:.:||.|..:  ||..|          :::...|
  Rat   312 QPLKATISPRKVKSSVGSQVSLSCSVTGNEDQELSWYRNGE--ILNPG----------KNVRITG 364

  Fly   109 SDEWTLRISSPQPRDSGTYECQVSTEPKISQGFRLNVVV--SRAKILGN-AELFIKSGSDINLTC 170
            .:...|.:......|.|.|:|.|..: |:|....:.||:  ...||:.. :|..:.....::|.|
  Rat   365 LNHANLIMDHMVKSDGGAYQCFVRKD-KLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLVC 428

  Fly   171 LAMQSPVPPSFIYWY---------KGKRVMNYSQRGGINVITERSTRTSKLLIAKATPADSGNYT 226
            ....:|:|.  :.|.         .|.|:   ||     :||......|.|.|:.:...|.|.|.
  Rat   429 NVKGTPLPT--VTWTLDDDPILKGSGHRI---SQ-----MITSEGNVVSYLNISSSQVRDGGVYR 483

  Fly   227 CSPSSSDSASVVVHV--INGEHPAAMQHGNSSATCLRPLSSTSVPFVLATWMSMTVA-----SVA 284
            |  ::::||.||::.  ||...||:          :||:.:.:......|::...|.     |:.
  Rat   484 C--TANNSAGVVLYQARINVRGPAS----------IRPMKNITAIAGRDTYIHCRVIGYPYYSIK 536

  Fly   285 WNSNLNI 291
            |..|.|:
  Rat   537 WYKNANL 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr4NP_001014616.2 V-set 53..146 CDD:284989 23/92 (25%)
IG_like 53..145 CDD:214653 23/91 (25%)
ig 153..227 CDD:278476 18/83 (22%)
IG_like 161..>227 CDD:214653 17/74 (23%)
DscamXP_038943864.1 Ig 26..121 CDD:416386
Ig strand A' 33..37 CDD:409353
Ig strand B 40..49 CDD:409353
Ig strand C 55..61 CDD:409353
Ig strand C' 63..66 CDD:409353
Ig strand D 72..75 CDD:409353
Ig strand E 80..85 CDD:409353
Ig strand F 98..106 CDD:409353
Ig strand G 109..121 CDD:409353
Ig 125..210 CDD:416386
Ig strand A 126..130 CDD:409353
Ig strand A' 132..136 CDD:409353
Ig strand B 139..149 CDD:409353
Ig strand C 157..163 CDD:409353
Ig strand C' 164..167 CDD:409353
Ig strand E 179..185 CDD:409353
Ig strand F 191..201 CDD:409353
IGc2 239..300 CDD:197706
Ig strand B 242..246 CDD:409353
Ig strand C 255..259 CDD:409353
Ig strand F 290..295 CDD:409353
Ig 313..395 CDD:416386 25/94 (27%)
Ig strand A 314..319 CDD:409353 0/4 (0%)
Ig strand A' 322..326 CDD:409353 1/3 (33%)
Ig strand B 329..339 CDD:409353 3/9 (33%)
Ig strand C 344..350 CDD:409353 2/5 (40%)
Ig strand C' 351..354 CDD:409353 0/4 (0%)
Ig strand E 368..374 CDD:409353 1/5 (20%)
Ig strand F 381..389 CDD:409353 4/7 (57%)
Ig 406..501 CDD:416386 26/106 (25%)
Ig strand A 406..409 CDD:409353 0/2 (0%)
Ig strand A' 415..419 CDD:409353 1/3 (33%)
Ig strand B 422..431 CDD:409353 2/8 (25%)
Ig strand C 436..442 CDD:409353 2/7 (29%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 4/15 (27%)
Ig strand E 464..473 CDD:409353 3/8 (38%)
Ig strand F 480..488 CDD:409353 3/9 (33%)
Ig strand G 491..501 CDD:409353 3/9 (33%)
Ig 504..593 CDD:416386 10/50 (20%)
Ig strand A 505..507 CDD:409353 1/11 (9%)
Ig strand A' 512..516 CDD:409353 0/3 (0%)
Ig strand B 519..526 CDD:409353 1/6 (17%)
Ig strand C 533..539 CDD:409353 2/5 (40%)
Ig strand C' 540..542 CDD:409353 1/1 (100%)
Ig strand D 549..553 CDD:409353
Ig strand E 557..563 CDD:409353
Ig strand F 571..579 CDD:409353
Ig strand G 583..593 CDD:409353
Ig 596..686 CDD:416386
Ig strand A 597..599 CDD:409353
Ig strand B 611..620 CDD:409353
Ig strand C 625..632 CDD:409353
Ig strand C' 634..636 CDD:409353
Ig strand D 643..648 CDD:409353
Ig strand E 651..658 CDD:409353
Ig strand F 665..673 CDD:409353
Ig strand G 676..685 CDD:409353
Ig_DSCAM 689..784 CDD:409397
Ig strand B 707..711 CDD:409397
Ig strand C 720..724 CDD:409397
Ig strand E 749..753 CDD:409397
Ig strand F 763..768 CDD:409397
Ig strand G 777..780 CDD:409397
Ig_DSCAM 785..884 CDD:409398
Ig strand B 805..809 CDD:409398
Ig strand C 818..822 CDD:409398
Ig strand E 848..852 CDD:409398
Ig strand F 862..867 CDD:409398
Ig strand G 875..878 CDD:409398
FN3 885..978 CDD:238020
FN3 986..1083 CDD:238020
FN3 1091..1184 CDD:238020
FN3 1189..1278 CDD:238020
Ig_3 1287..1363 CDD:404760
Ig strand B 1303..1307 CDD:409353
Ig strand C 1316..1320 CDD:409353
Ig strand E 1342..1346 CDD:409353
Ig strand F 1356..1361 CDD:409353
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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