DRSC/TRiP Functional Genomics Resources

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Protein Alignment upd3 and upd2

DIOPT Version :10

Sequence 1:NP_001097014.1 Gene:upd3 / 3346149 FlyBaseID:FBgn0053542 Length:401 Species:Drosophila melanogaster
Sequence 2:NP_001356882.1 Gene:upd2 / 32805 FlyBaseID:FBgn0030904 Length:406 Species:Drosophila melanogaster


Alignment Length:407 Identity:90/407 - (22%)
Similarity:154/407 - (37%) Gaps:131/407 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RRLNRNWS---------LILLALAM---------SQFAL------SGGGCGVSAAPSHLATPPTD 84
            |..:.:||         :::|::.|         .|.||      ...|...|::.|..::....
  Fly    19 RSAHSSWSCHSRQVLLVIMILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDI 83

  Fly    85 SPSSPINPTNPL---------------------KHLQKRSRAANFRLTFQQKLNASSTHL----- 123
            .|:..:||...|                     :..|...|||...:..|:..:|.|.:|     
  Fly    84 LPAFDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTRHARSHNLRLFSG 148

  Fly   124 -----DWENTCNLKPT---GLNETHSKAKRCKKRQRILQNLQNQTGRELRGIQAEDKARITTNAD 180
                 :|||.|....|   .|:::.:...|..||:. |:||:|.|..|.:.        ||..| 
  Fly   149 KSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKH-LENLRNITMSEYQD--------ITHRA- 203

  Fly   181 KLATVSTKTLDIVEKNKWRFYKGNYRFLPRLNLTSKQLNLRHAHRDLQIYVGAFTYMRNIKLHWD 245
                    ||:......|   :..|:|||.:...:..:.|:..:|.:|.:||:|:|:.  :..:.
  Fly   204 --------TLEYGNLQHW---QREYKFLPNMTRPTSAVKLKTWYRHMQTFVGSFSYLG--RAQYK 255

  Fly   246 LANLQAKSV---LSDELGRMRKSAREVLCSVEEAINLTNLLYTPNRQRAPQPRGQKKRRQAQPVV 307
            ....|.||:   ::.||..:..|||.:||.:|..||.:          .|...|.|..|      
  Fly   256 FRKDQQKSLNEAVTKELHDLLVSARYMLCEIELTINAS----------YPNSNGAKLSR------ 304

  Fly   308 TYKILPRKLMEKRLQQFNSTLVPLVELHQQATLAARGEDVPPPPDDLMVLEQHALFTKLKFVQYL 372
                :.|:.||:|| .|::.....:|..|:               ||.|       :|..:.|||
  Fly   305 ----VSRQAMEERL-NFHTPANGSMEADQR---------------DLKV-------SKELYFQYL 342

  Fly   373 ----KSIRKILANQRKS 385
                |::.::|...|::
  Fly   343 NNVWKTLHRVLRRPRRN 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upd3NP_001097014.1 Unpaired 100..280 CDD:374263 53/195 (27%)
upd2NP_001356882.1 Unpaired 144..293 CDD:374263 45/171 (26%)

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