DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33521 and Lima1

DIOPT Version :10

Sequence 1:NP_001014703.1 Gene:CG33521 / 3346141 FlyBaseID:FBgn0250819 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001107017.1 Gene:Lima1 / 65970 MGIID:1920992 Length:753 Species:Mus musculus


Alignment Length:538 Identity:115/538 - (21%)
Similarity:191/538 - (35%) Gaps:169/538 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLNPQSSKISFGNGLPLKKKKTKKSKTNEYD-----------------------NQNINMKKSFT 44
            :::.|||..|:.|.|     ||.:|||::::                       .:|..:..|..
Mouse   277 AVSKQSSPASYTNEL-----KTSESKTHKWEQKENVPPGPEACSVHQEGSKVSTTENSLVALSVP 336

  Fly    45 KFDDL-------QKRNVIHVR----------------SRDSKKAQSLFRSTIPEKVENCHQCKKP 86
            ..||.       :.:..:|.:                |:.:||.|:      |.| |:|.:|:|.
Mouse   337 AEDDTCNSQVKSEAQQPMHPKPLSPDARTSSLPESSPSKTAKKFQA------PAK-ESCVECQKT 394

  Fly    87 VYKMEEVILSLKTATTIFHKTCLRCKDCGKHLKFDSYNVHDGSLYCSMHFKLIFAPKVVYEEFTP 151
            ||.||.::.:.:    :||.:|.||..|...|...:|....|.:||..||..:|..|..|:|...
Mouse   395 VYPMERLLANQQ----VFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 455

  Fly   152 RK------------AELIIRENQPIKLPPDVAKASDKPSLGLDELQELNLRSKFKVFENGYEEHN 204
            .|            .|.:.|..|    ||:..::...|  |:::..    .:|..|.....|...
Mouse   456 HKQHKDLWASKSDNEETLGRPAQ----PPNAGESPHSP--GVEDAP----IAKVGVLAASMEAKA 510

  Fly   205 NNLRERQDIAITHSKSIQSTL---TKFHGLGIPNSELTKL-------DDKNSDNNSDGDGDMNFM 259
            ::.|||:| ....:|.::...   .:..|.|....|..|:       :|......:..|.|::..
Mouse   511 SSQRERED-KPAETKKLRIAWPPPAELGGSGSALEEGIKVSKPKWPPEDDVCKTEAPEDVDLDLK 574

  Fly   260 CLK-----KEIERETPVGLGEAMNDIRSKFEQGDLMAKEGRREERKQEIQNIRSRLFLGKQAKIK 319
            .|:     ||..|...|......:.|:|.......:.|.....|:.:|        |.|      
Mouse   575 KLRRSSSLKERSRPFTVAASFRTSSIKSPKASSPSLRKGWSESEQSEE--------FGG------ 625

  Fly   320 EMYKLAVAESEQPVTSVGKTPDICAIKPTQEIKN----RFENGEVYKDSKILSSEVSCGIHEDAD 380
               .:|..|.:|...:          :|:.|.:|    |::..||.:.             :|..
Mouse   626 ---GIATMERKQTENA----------RPSGEKENVGKSRWQGEEVPRS-------------KDRS 664

  Fly   381 VFESGISKASRNIFMKLDANIKSGLSNHVQY-----------------TLPDKKYQIHNQKVQEN 428
            .||    ..|.| ||:..|||... .|||..                 |...|::...|||.|:.
Mouse   665 SFE----LESEN-FMENGANIAED-DNHVHAQQSPLEPEAPGWSGFVDTTAAKEFTTQNQKSQDV 723

  Fly   429 S--DVEIVKSDSKPEEVK 444
            .  :.|:|:..|..|::|
Mouse   724 GFWEGEVVRELSVEEQIK 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33521NP_001014703.1 LIM_Mical_like_2 80..136 CDD:188829 18/55 (33%)
Lima1NP_001107017.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..66
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..186
Required for interaction with NPC1L1. /evidence=ECO:0000269|PubMed:29880681 164..166
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..326 11/53 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 341..379 2/37 (5%)
LIM_Eplin_alpha_beta 388..440 CDD:188869 18/55 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 467..493 7/31 (23%)
Required for interaction with MYO5B. /evidence=ECO:0000269|PubMed:29880681 491..511 3/23 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 505..669 37/208 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 682..703 3/21 (14%)
Blue background indicates that the domain is not in the aligned region.

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