DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrs and GGA2

DIOPT Version :9

Sequence 1:NP_525099.3 Gene:Hrs / 33458 FlyBaseID:FBgn0031450 Length:760 Species:Drosophila melanogaster
Sequence 2:NP_011976.1 Gene:GGA2 / 856508 SGDID:S000001150 Length:585 Species:Saccharomyces cerevisiae


Alignment Length:449 Identity:97/449 - (21%)
Similarity:168/449 - (37%) Gaps:121/449 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KNLENATSHLRLEPDWPSILLICDEINQKD-VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVK 71
            :.::.|......|||....|.|.|.||:|. ..|::|..|:.|.:|:...|.:.::|.:|:.:||
Yeast    28 RKIQRACRMSLAEPDLALNLDIADYINEKQGAAPRDAAIALAKLINNRESHVAIFALSLLDVLVK 92

  Fly    72 NCGAPVHEEVFTKENC-EMFSSFLESTP--HENVRQKMLELVQTWAYAFRSSDKYQ----AIKDT 129
            |||.|.|.::..||.. |:...|....|  :..:::.:|..::.|.........|:    .|:|.
Yeast    93 NCGYPFHLQISRKEFLNELVKRFPGHPPLRYSKIQRLILTAIEEWYQTICKHSSYKNDMGYIRDM 157

  Fly   130 MTILKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194
            ..:||.||:.||::.|:|   .|...|:                    :..:...::...|..|:
Yeast   158 HRLLKYK
GYAFPKISESD---LAVLKPS--------------------NQLKTASEIQKEQEIAQ 199

  Fly   195 QCPLP---KYGIEKEVRVCDGCFAALQRPTSG--SGGAKSGPRPADSEL-----PAEYLNSTL-A 248
            ...|.   :.|..:::|..:    .|.:..:|  ...|....:...|||     .|:.||..| :
Yeast   200 AAKLEELIRRGKPEDLREAN----KLMKIMAGFKEDNAVQAKQAISSELNKLKRKADLLNEMLES 260

  Fly   249 QQVQTPARKTEQELKEEEELQLALALSQSEAEQQKPKLQSLPPAAYRMQQRSPSPEAPPEPKEYH 313
            ...|....:|.|||..      ||.::|       ||.|.:..                     .
Yeast   261 PDSQNWDNETTQELHS------ALKVAQ-------PKFQKIIE---------------------E 291

  Fly   314 QQPEEATNPELAKY-------LNRSYWEQRKISESSSMASPSAPSPMPPTPQPQQIMPLQVKS-- 369
            :|.::|...:|.|:       |.:....:...|.::|...||..|           .|||..|  
Yeast   292 EQEDDALVQDLLKFNDTVNQLLEKFNLLKNGDSNAASQIHPSHVS-----------APLQQSSGA 345

  Fly   370 -ADEVQIDEFAANMRTQVEIFVNRMKSNSSRGRSISN--------DSSVQTLFMTLTSL 419
             .:|:.:.:|            |.:....|:|.:.:|        ::||..|...||.|
Yeast   346 LTNEINLIDF------------NDLDEAPSQGNNNTNGTGTPAAAETSVNDLLGDLTDL 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HrsNP_525099.3 VHS_Hrs_Vps27p 2..143 CDD:239626 41/142 (29%)
FYVE_Hrs 157..217 CDD:277260 5/62 (8%)
Hrs_helical 377..471 CDD:289018 11/51 (22%)
GBP_C <456..520 CDD:303769
coiled coil 501..512 CDD:293879
GGA2NP_011976.1 VHS_GGA_fungi 26..164 CDD:340795 37/135 (27%)
GGA_N-GAT 199..233 CDD:408115 5/37 (14%)
GAT_GGA_fungi 235..324 CDD:410583 23/122 (19%)
Alpha_adaptinC2 475..583 CDD:397151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341410
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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