DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmtc1 and TPR13

DIOPT Version :10

Sequence 1:NP_995615.2 Gene:Tmtc1 / 33455 FlyBaseID:FBgn0051690 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_196571.1 Gene:TPR13 / 830873 AraportID:AT5G10090 Length:594 Species:Arabidopsis thaliana


Alignment Length:438 Identity:102/438 - (23%)
Similarity:155/438 - (35%) Gaps:95/438 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   457 LLFGLGFGHLWQRVNSSWRSRLMLLCGLALLLGVHGVRTFRRNLDWRDEEQLFRSAISINPPKAL 521
            :||| ..|:|.|...|......:...|.....|.:||   ::.|    ||:...|...|......
plant   165 MLFG-NLGNLKQPGPSGGNQTTIQNNGYGNTGGGYGV---KKTL----EEERKTSVAQIPASNNQ 221

  Fly   522 GNLGSVLSAQGRYEEAELTLRMTLGHRPTMADAHFNLGVVHQKQLNFSSAIPCFRRAIELRPQLA 586
            ...||:..|.....:.| ||::              :|....|..||:.|:..:..||.:.|:.|
plant   222 DQSGSLCRAISTRMDPE-TLKI--------------MGNEDYKNGNFAEALALYEAAISIDPKKA 271

  Fly   587 VAYLNLGTSLISLGDHRQEAISVLRTGARLEGSGVRDRGAHVEARYTCYLQLSVLYRSDGRLQDA 651
            ....|...:|.:|| ...||:...|...|::        .|.   :..:.:|:.||...|.::::
plant   272 SYRSNKSAALTALG-RILEAVFECREAIRID--------PHY---HRAHHRLANLYLRLGEVENS 324

  Fly   652 AAALRESLKALPLLPQ----KQRAV-LHLRLGEILAELQDWN----EAEHQQRLAMQLQPE---- 703
            ....:.   |.|...|    |.:.| .||........|:|||    |.|:.........|:    
plant   325 IYHFKH---AGPEADQEDISKAKMVQTHLNKCTEAKRLRDWNTLIKETENTITTGADAAPQVYAL 386

  Fly   704 QGAAYV-TYGQTLARNGSRLAEAESWFKRALQLAPL---EPSSHHH----YADFLEQQERHHEAL 760
            |..|:: ||         |..||:.    ||...|:   |.|:.::    ||.||....:.|.|.
plant   387 QAEAFLKTY---------RHQEADD----ALSRCPVFDGEMSTKYYGSIGYAGFLVVWAQVHMAS 438

  Fly   761 GLRLRAAALAPQDYTLQSCVADALRLLNRLAEAELWYR-------KAVTLQPMAAHAH------- 811
            |..:.|.....:...|.....:...:|.| |:|....|       ||...|. |..|:       
plant   439 GRFVEAVEAIQRAGKLDGNNREVSMVLRR-AQAVTAARSRGNDFFKAGRFQE-ACTAYGEGLDHD 501

  Fly   812 -------ANLGAILQMRGLRKEAVACYHKALELQPGHAISRANLARMN 852
                   .|..|.|...|....||.....||.::||:..:|...|..|
plant   502 SRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCN 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc1NP_995615.2 ArnT 11..>209 CDD:441412
TMTC_DUF1736 271..340 CDD:462468
PilF 501..585 CDD:442297 18/83 (22%)
TPR repeat 518..546 CDD:276809 6/27 (22%)
TPR repeat 551..581 CDD:276809 7/29 (24%)
LapB 556..838 CDD:442196 75/323 (23%)
TPR repeat 586..611 CDD:276809 7/24 (29%)
TPR repeat 634..660 CDD:276809 4/25 (16%)
TPR repeat 671..699 CDD:276809 9/32 (28%)
TPR repeat 704..735 CDD:276809 9/31 (29%)
TPR repeat 740..768 CDD:276809 9/31 (29%)
TPR repeat 773..803 CDD:276809 8/36 (22%)
TPR repeat 808..836 CDD:276809 8/41 (20%)
TPR13NP_196571.1 TPR repeat 237..265 CDD:276809 9/42 (21%)
TPR repeat 270..300 CDD:276809 8/30 (27%)
LapB 280..568 CDD:442196 70/300 (23%)
TPR repeat 305..331 CDD:276809 4/28 (14%)
TPR 432..>586 CDD:440225 28/120 (23%)
TPR repeat 473..499 CDD:276809 6/26 (23%)
TPR repeat 504..534 CDD:276809 8/29 (28%)
TPR repeat 539..563 CDD:276809 3/11 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.