DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmtc1 and ifit16

DIOPT Version :10

Sequence 1:NP_995615.2 Gene:Tmtc1 / 33455 FlyBaseID:FBgn0051690 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_001333807.4 Gene:ifit16 / 795096 ZFINID:ZDB-GENE-131120-86 Length:435 Species:Danio rerio


Alignment Length:387 Identity:75/387 - (19%)
Similarity:125/387 - (32%) Gaps:138/387 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   553 DAHFN--LGV-VHQ-KQLNFSSAIPCFRRAIELRPQ---LAVAYLN-LGTSLISLGDHRQEAISV 609
            :.|||  ||. .|: |:|.        |...::.||   ..|.|.| ||....|||..|:...|:
Zfish    13 ECHFNWDLGCNKHKFKELQ--------RNMQDIEPQGIAWLVHYYNLLGFIQKSLGSDREALESL 69

  Fly   610 LRTGARLEGSGVRDRGAHVEARYT----CYLQLSVLYRSDGRLQDAAAALRESLKALPLLPQKQR 670
            .:..:.::..|..:....::....    .|..|..|.:|.|.|::                    
Zfish    70 QKAESVIQEQGTEETAVRLQVNKANLAWVYFHLGELEKSRGYLEE-------------------- 114

  Fly   671 AVLHLRLGEILAELQDWNEAEHQQRLAMQLQPEQGAAYVTYGQTLARNGSRLAEAESWFKRALQL 735
                      |.|||..:.|.....|..::..|:|...|.:      |.|:..:|..:||.||:.
Zfish   115 ----------LEELQRIHPAPPGCPLHPEVSGEKGWTLVKF------NKSKKHKAIDYFKMALEA 163

  Fly   736 APLEPSSHHHYADFLEQQERHHEALGLRLR----------------------AAALAPQDYTLQS 778
            .|              ::|..|:.|.|.:.                      ||.:.|.|..|||
Zfish   164 EP--------------EREEWHKGLALAMNMAFIDTEQTPELKAEILEKVKTAAEIDPNDLFLQS 214

  Fly   779 CVA-------------DALRLLNRLAEAE---------LWYRKAVT------------------- 802
            ...             :...||.:..|.:         .:||...|                   
Zfish   215 LYVLKKSEVKGENVDEEIQSLLEKSIETKNPSGLSSIFYYYRNNSTEKGFYEGERVRKHFPTSTK 279

  Fly   803 LQPMAAHAHA----NLGAILQMR-GLRKEAVACYHKALELQPGHAISRANLARMNVHKHENE 859
            :..:.|:.|.    |:.|..:.| .|.::::..:.:.|...|.|...:..||.::.:.|..|
Zfish   280 VLKIVANLHKWKVYNMKADTEQRENLARKSIELFEELLTHYPDHLKVKLALASLHQYAHNTE 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc1NP_995615.2 ArnT 11..>209 CDD:441412
TMTC_DUF1736 271..340 CDD:462468
PilF 501..585 CDD:442297 11/38 (29%)
TPR repeat 518..546 CDD:276809
TPR repeat 551..581 CDD:276809 9/31 (29%)
LapB 556..838 CDD:442196 68/361 (19%)
TPR repeat 586..611 CDD:276809 10/25 (40%)
TPR repeat 634..660 CDD:276809 6/25 (24%)
TPR repeat 671..699 CDD:276809 6/27 (22%)
TPR repeat 704..735 CDD:276809 9/30 (30%)
TPR repeat 740..768 CDD:276809 5/49 (10%)
TPR repeat 773..803 CDD:276809 10/70 (14%)
TPR repeat 808..836 CDD:276809 6/32 (19%)
ifit16XP_001333807.4 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.