DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc1 and Tmtc3

DIOPT Version :10

Sequence 1:NP_995615.2 Gene:Tmtc1 / 33455 FlyBaseID:FBgn0051690 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001129330.1 Gene:Tmtc3 / 314785 RGDID:1306351 Length:920 Species:Rattus norvegicus


Alignment Length:924 Identity:270/924 - (29%)
Similarity:394/924 - (42%) Gaps:236/924 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ATLSHKDLAGLAGCSALAFVLYLNTLNAGFVYDDRRAILANGDVTGARPLANLLRNDFWGTPLVD 77
            |.::.|::..:.|..|   ..|.|:|..|||:||..|||.|.|:..:.||..|.:|||||||:.:
  Rat     7 ADINFKEVTLIVGVVA---ACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSE 68

  Fly    78 SGSHGSWRPLCVLSFRLNYLAGGMTPLGYHLVNVMLHCVATWLVFLVARTLLPSRMGVLAAGALF 142
            ..||.|:|||.||:||||||...:.|:.|||:|.:.|.|.:.:...|.|..|..|..|:|| .||
  Rat    69 ERSHKSYRPLTVLTFRLNYLLSELKPMSYHLLNTVFHAVVSVIFLKVCRLFLDKRGSVIAA-LLF 132

  Fly   143 AVHPAHTEAVAGLVGRADLASCVCYLLAYLSYRRHM---LNREWGSLILTIMLALAALLCKETAI 204
            ||||.|||||.|:||||:|.|.|.:|.|:|||.:..   .:..|..:.||::|...|.||||..|
  Rat   133 AVHPIHTEAVTGVVGRAELLSSVFFLAAFLSYTKSKGPDNSIVWTPIALTVLLVAVATLCKEQGI 197

  Fly   205 TALLLCGLCDVLSPVGRENSDKVC---------DGSISGLASFNFQRRFRSLSILGFTLLCGLYC 260
            |.:.:|.:.:|....| .....:|         .|||    .|:..:....|.:|.|:.|..:..
  Rat   198 TVVGICCVYEVFVAQG-YTLPLLCAVAGQFLRGKGSI----PFSMLQTLIKLIVLMFSTLLLVVI 257

  Fly   261 RLSLLPRPSTAFSAADNPTAHESCFWTRTLTFLYLPVANFGILLWPQELSFDWGMEAVSRIRTLW 325
            |:.::......|:..|||.| .|...||.|||.||...|..:||.|.||..||.|..:..|.:..
  Rat   258 RVQVIQSQLPVFTRFDNPAA-VSPTPTRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESFL 321

  Fly   326 DARNILTAGFYGSLVAILWKGSGLRSAASPMDFAEVANISLPLLRRLGGNSCHTWLGLTCDCHHQ 390
            |.||:.|..|:..|.|:     |:.|...|.|                                 
  Rat   322 DVRNLATFAFFCFLGAL-----GIFSLRYPGD--------------------------------- 348

  Fly   391 LSAPSYRSASAIYSTSSKSKSASWTAAPILGTAFLVLPFLPASNLLFYVGFVMAERVLYLPSVGY 455
                           |||:        .::..:.:.|||:|||||.|.||||:||||||:||:|:
  Rat   349 ---------------SSKT--------VLMALSLMALPFIPASNLFFPVGFVVAERVLYVPSMGF 390

  Fly   456 CLLFGLGFGHLWQRV-NSSWRSRLMLLCGLALLLGVHGVRTFRRNLDWRDEEQLFRSAISINP-- 517
            |:|    ..|.||:: |.|...:|..:| |::::..|.::|..||.||..|..||.||:.:|.  
  Rat   391 CIL----VAHGWQKISNKSVLKKLSWVC-LSMVILTHALKTLHRNWDWESEYTLFMSALKVNKNN 450

  Fly   518 PKALGNLGSVLSAQGRYEEAELTLRMTLGHRPTMADAHFNLGVVHQKQLN--------------- 567
            .|...|:|..|..:..:|:|..........:|....||.|:|..: |.||               
  Rat   451 AKLWNNVGHALENEKNFEKALKYFLQATHVQPDDIGAHMNVGRTY-KNLNRTKEAEESYMLAKSL 514

  Fly   568 -----------------------------------FSSAIPCFRRAIELRPQLAVAYLNLGTSLI 597
                                               ...|...:|:||.:||....||::.|..|:
  Rat   515 MPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLL 579

  Fly   598 SLG------DHRQEAISVLRTGARLEGSGVRDRGAHVEARYTCYLQLSVLYRSDGRLQDAAAALR 656
            .:.      :...:|:.:.|..|.|                  :..|:::|.   .|::...||:
  Rat   580 KMNKPLKAKEAYLKALELDRNNADL------------------WYNLAIVYI---ELKEPDEALK 623

  Fly   657 ESLKALPL-----LPQKQRAVLHLRLGEILAELQDWNEAEHQQRLAMQL--QPEQGAAYVTYGQT 714
            ...:||.|     |.....|:|....||:..      ..|.::||...:  :|:....|...|. 
  Rat   624 NFNRALELNSRHKLALFNSAILMQESGEVKL------RPEARKRLLNYINEEPQDANGYFNLGM- 681

  Fly   715 LARNGSRLAEAESWFKRALQLAPLEPSSHHHYADFLEQQERHHEALGLRLRAAA--LAPQDYTLQ 777
            ||.:..:.:|||:|.|||::|.|          ||               |:|.  ||    .|.
  Rat   682 LAMDDKKDSEAETWMKRAIKLQP----------DF---------------RSALFNLA----LLY 717

  Fly   778 SCVADALRLLNRLAEAELWY---RKAVTLQPMAAHAHANLGAIL-----QMRGLRKEAVACYHKA 834
            |..|..|:.|..|.|...:|   .|.:.|:          |.||     .:.|.:|    |:.|.
  Rat   718 SQTAKELKALPILEELLRYYPDHTKGLILK----------GDILMNQKKDIAGAKK----CFEKI 768

  Fly   835 LELQPGHAISRANL 848
            ||:.|.:...:.||
  Rat   769 LEMDPSNVQGKHNL 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc1NP_995615.2 ArnT 11..>209 CDD:441412 90/198 (45%)
TMTC_DUF1736 271..340 CDD:462468 28/68 (41%)
PilF 501..585 CDD:442297 28/135 (21%)
TPR repeat 518..546 CDD:276809 6/27 (22%)
TPR repeat 551..581 CDD:276809 11/79 (14%)
LapB 556..838 CDD:442196 74/354 (21%)
TPR repeat 586..611 CDD:276809 5/30 (17%)
TPR repeat 634..660 CDD:276809 5/25 (20%)
TPR repeat 671..699 CDD:276809 7/27 (26%)
TPR repeat 704..735 CDD:276809 11/30 (37%)
TPR repeat 740..768 CDD:276809 3/27 (11%)
TPR repeat 773..803 CDD:276809 9/32 (28%)
TPR repeat 808..836 CDD:276809 7/32 (22%)
Tmtc3NP_001129330.1 Stt3 77..>375 CDD:440898 118/365 (32%)
TMTC_DUF1736 263..336 CDD:462468 28/73 (38%)
TPR 444..673 CDD:440225 46/256 (18%)
TPR repeat 451..479 CDD:276809 6/27 (22%)
TPR repeat 484..528 CDD:276809 7/44 (16%)
TPR repeat 535..562 CDD:276809 3/26 (12%)
LapB 549..804 CDD:442196 72/305 (24%)
TPR repeat 567..597 CDD:276809 5/29 (17%)
TPR repeat 602..630 CDD:276809 8/48 (17%)
TPR repeat 673..701 CDD:276809 11/28 (39%)
TPR repeat 706..736 CDD:276809 12/48 (25%)
TPR repeat 741..770 CDD:276809 9/42 (21%)
TPR repeat 776..799 CDD:276809 2/7 (29%)
ParB_N_Srx 799..>841 CDD:452888
Blue background indicates that the domain is not in the aligned region.

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