DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmtc1 and Ifit3

DIOPT Version :10

Sequence 1:NP_995615.2 Gene:Tmtc1 / 33455 FlyBaseID:FBgn0051690 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001007695.1 Gene:Ifit3 / 309526 RGDID:1359681 Length:411 Species:Rattus norvegicus


Alignment Length:478 Identity:89/478 - (18%)
Similarity:161/478 - (33%) Gaps:146/478 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 LPLLRRLGGNSCH-TWLGLTCDCHHQLSAPSY---RSASAIYSTSSKSKSASWTAAPILGTAFLV 426
            ||.|:      || ||     :...:.|..|:   |..:.|.:.:|:.|:..:            
  Rat    13 LPQLK------CHFTW-----NLFKEGSISSHMEDRVCNQIENLNSEHKATMY------------ 54

  Fly   427 LPFLPASNLLFYVGFVMAERVLYLPSVGY----------------CLLFGLGFGHLWQRVN---- 471
                   :||.|:..:..|....|..:|.                ||:....:..::.|:.    
  Rat    55 -------DLLAYIKHLDGENEAALECLGQAEDLRKSERSDRAEIKCLVTWGNYAWIYYRIGQLSE 112

  Fly   472 -SSWRSRLMLLCGLALLLGVHGVRTFRRNLDWRDEEQLFRSAISINPPKALGNLGSVLSAQGRYE 535
             .::..::..:|                        |.|.:..|:..|:.....|......||.|
  Rat   113 AQAYADKVRQVC------------------------QKFANPYSMECPELDCEEGWTRLKCGRNE 153

  Fly   536 EAELTLRMTLGHRPT-------MADAHFNLGVVHQKQLNFSSAIPCFRRAIELRPQLAVAYLNLG 593
            .|::.....|..:|.       ||.|.:.|....:||.    ::...::|:||..|.....:.|.
  Rat   154 RAKMCFEKALEEKPEDPECRAGMAIAMYRLQEKPEKQF----SVDALKQAMELNSQNQYEKVLLA 214

  Fly   594 TSLISLGDHRQEAISVLRTGARLEGSGVRDRGAHVEARYTCYLQLSV-LYRSDGRLQDA----AA 653
            ..|..:|:..:        ..||....: ::|.:    .|..||.:. .||..|.|..|    ..
  Rat   215 LKLQKMGEEAE--------AERLVEDAL-EKGPN----QTDVLQKAAQFYRKKGNLDRAIEFLGK 266

  Fly   654 ALRESLKALPLLPQKQRAVLHLRLGEILAELQDWNEAEHQQRLAMQLQPEQGAAYVTYGQTLARN 718
            |||.:....||.     :::..|..|.|.:||:..||:..:|                .||:...
  Rat   267 ALRSTANNSPLY-----SLVMCRYREKLKQLQNTGEADKSER----------------RQTMEEL 310

  Fly   719 GSRLAEAESWFKRALQLAPLEPSSHHHYADFLEQQERHHEALGLRLRAAALAPQDYTLQSCVADA 783
            .....|   :..:|||..|...:|:....||.|.::.:...              ::.:|..|:.
  Rat   311 RRLTME---YMNKALQRRPSPLNSYSDLIDFPEVEKCYQMV--------------FSEESPRAED 358

  Fly   784 LRLLNRLAEAELWYRKAVTLQPM 806
            ..|..|....:.::||:..|:.:
  Rat   359 QELFERYCNLQEYHRKSEGLKAL 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc1NP_995615.2 ArnT 11..>209 CDD:441412
TMTC_DUF1736 271..340 CDD:462468
PilF 501..585 CDD:442297 20/90 (22%)
TPR repeat 518..546 CDD:276809 6/27 (22%)
TPR repeat 551..581 CDD:276809 7/29 (24%)
LapB 556..838 CDD:442196 52/256 (20%)
TPR repeat 586..611 CDD:276809 3/24 (13%)
TPR repeat 634..660 CDD:276809 10/30 (33%)
TPR repeat 671..699 CDD:276809 8/27 (30%)
TPR repeat 704..735 CDD:276809 5/30 (17%)
TPR repeat 740..768 CDD:276809 4/27 (15%)
TPR repeat 773..803 CDD:276809 6/29 (21%)
TPR repeat 808..836 CDD:276809
Ifit3NP_001007695.1 TPR_12 51..126 CDD:315987 10/117 (9%)
TPR repeat 51..79 CDD:276809 6/46 (13%)
TPR repeat 93..123 CDD:276809 3/29 (10%)
TPR 96..325 CDD:440225 56/293 (19%)
TPR repeat 136..164 CDD:276809 6/27 (22%)
TPR repeat 206..236 CDD:276809 5/38 (13%)
TPR repeat 241..269 CDD:276809 9/27 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.