DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf5 and TBP1

DIOPT Version :9

Sequence 1:NP_608700.2 Gene:Trf5 / 33454 FlyBaseID:FBgn0031446 Length:305 Species:Drosophila melanogaster
Sequence 2:NP_187953.1 Gene:TBP1 / 820546 AraportID:AT3G13445 Length:200 Species:Arabidopsis thaliana


Alignment Length:224 Identity:45/224 - (20%)
Similarity:92/224 - (41%) Gaps:42/224 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 LANKASEGAEEMSLP-----IVNPREPTLKDVLSIYENVSKLGDIQRYLNVIYKPFYCLAMTTSK 111
            :.::..||:..:.|.     ||    |||::::|.             :|:           ..|
plant     1 MTDQGLEGSNPVDLSKHPSGIV----PTLQNIVST-------------VNL-----------DCK 37

  Fly   112 FHLLELDMGLKNTAFEPEKHMALFVYRYSPTRSIRIYPHGNIYC-----QAFCKNSARYGLANIL 171
            ..|..:.:..:|..:.|::..|:.:....|..:..|:..|.:.|     :.|.|.:|| ..|.|:
plant    38 LDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAAR-KYARIV 101

  Fly   172 KELRYLGYAPRLRRLKTNAVNATFSVPFNLNLRQFHLENPVVTRYDTSKYPFLVYKMMGTTVEIA 236
            ::   ||:..:.:..|...:..:..|.|.:.|......:...:.|:...:|.|:|:|....:.:.
plant   102 QK---LGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLL 163

  Fly   237 IFPTGYVIVLFATTMEITKLAIAHILPTL 265
            ||.:|.:::..|...:.|..|..:|.|.|
plant   164 IFVSGKIVITGAKMRDETYKAFENIYPVL 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf5NP_608700.2 PLN00062 110..265 CDD:177693 34/159 (21%)
TBP 191..267 CDD:278767 17/75 (23%)
TBP1NP_187953.1 PLN00062 22..200 CDD:177693 41/203 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10126
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

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