Protein Alignment Trf4 and tbp-1

DIOPT Version :9

• Sequence 1: NP_608699.1
• Gene: Trf4 / 33452
• FlyBaseID: FBgn0031444
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_001370645.1
• Gene: tbp-1 / 176054
• WormBaseID: WBGene00006542
• Length: 340
• Species: Caenorhabditis elegans
• Alignment Length: 165
• Identity: 34/165 - (20%)
• Similarity: 68/165 - (41%)
• Gaps: 1/165 - (0%)

  Fly   130 MDFNCRFSMYELCLLLAESRFDPSSHPSVVVKITHPSAQVKIHAGGKISST-ALNADSARSGLFK 193
            ::...:..:.::.|....:.::|....:|:::|..|.....|.:.||:..| |.:.:::|....|
 Worm   175 VNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARK 239

  Fly   194 VIRILQDLDYKVDIMNFSKNIVNASFSMPFKIDLDLMSRRHVVEVAQNRSRRPFITYTTENLGVR 258
            ..||:|.|.::.....|....:..|..:.|.|.|:.:...|...........|.:.|......|.
 Worm   240 YARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVV 304

  Fly   259 FAVFPTGFVLVLHSTSHCETREAIANFLPILAKLK 293
            ..:|.:|.|::..:.:..:..||.....|||...|
 Worm   305 LLIFVSGKVVITGAKTKRDIDEAFGQIYPILKGFK 339

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Trf4	NP_608699.1	TBP	128..200	CDD:278767	14/70 (20%)
		PLN00062	131..294	CDD:177693	34/164 (21%)
		TBP	213..291	CDD:278767	16/77 (21%)
tbp-1	NP_001370645.1	TBP_eukaryotes	165..338	CDD:239952	33/162 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2101
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0.905639	Normalized mean entropy	S205
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10126
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.860