Protein Alignment Trf4 and Tbp

DIOPT Version :9

• Sequence 1: NP_608699.1
• Gene: Trf4 / 33452
• FlyBaseID: FBgn0031444
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_001004198.1
• Gene: Tbp / 117526
• RGDID: 67398
• Length: 318
• Species: Rattus norvegicus
• Alignment Length: 235
• Identity: 49/235 - (20%)
• Similarity: 88/235 - (37%)
• Gaps: 29/235 - (12%)

  Fly    57 EDLVTEPMKTESYLYKDYFN-KSPIDFPWEKAYEKGSSLGPDFYIDYENIFDNVANLAEIEEKLE 120
            :.|.|.|:...:.||..... .:||. |...|.| .|.:.|..    :||...|
  Rat   104 QTLTTAPLPGTTPLYPSPMTPMTPIT-PATPASE-SSGIVPQL----QNIVSTV----------- 151

  Fly   121 LHFRPFTCVMDFNCRFSMYELCLLLAESRFDPSSHPSVVVKITHPSAQVKIHAGGKISST-ALNA 184
                      :..|:..:..:.|....:.::|....:|:::|..|.....|.:.||:..| |.:.
  Rat   152 ----------NLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSE 206

  Fly   185 DSARSGLFKVIRILQDLDYKVDIMNFSKNIVNASFSMPFKIDLDLMSRRHVVEVAQNRSRRPFIT 249
            :.:|....|..|::|.|.:....::|....:..|..:.|.|.|:.:...|....:......|.:.
  Rat   207 EQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLI 271

  Fly   250 YTTENLGVRFAVFPTGFVLVLHSTSHCETREAIANFLPIL 289
            |......:...:|.:|.|::..:....|..||..|..|||
  Rat   272 YRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPIL 311

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Trf4	NP_608699.1	TBP	128..200	CDD:278767	14/72 (19%)
		PLN00062	131..294	CDD:177693	34/160 (21%)
		TBP	213..291	CDD:278767	17/77 (22%)
Tbp	NP_001004198.1	PLN00062	141..317	CDD:177693	38/196 (19%)
		TBP_eukaryotes	141..314	CDD:239952	38/196 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2101
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10126
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910