DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4R2 and psmb13a

DIOPT Version :9

Sequence 1:NP_001259950.1 Gene:Prosbeta4R2 / 33451 FlyBaseID:FBgn0031443 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_571752.2 Gene:psmb13a / 64280 ZFINID:ZDB-GENE-001208-2 Length:281 Species:Danio rerio


Alignment Length:207 Identity:50/207 - (24%)
Similarity:88/207 - (42%) Gaps:22/207 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLY 69
            ||.|:...|.|:|.:||......|......:|||.::........|...||.:.||.:|.||.::
Zfish    46 TIAGVVFKDGVVLGADTRATSDEVVADKMCAKIHYIAPNIYCCGAGTAADTEKTTDMLSSNLTIF 110

  Fly    70 KISHGYHLSAKSAAHFTRKTLADY---IRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINH 131
            .::.|.:.....|.:..:..|..|   |..|      ::|.|.|.. |..|:.:..||:...:.:
Zfish   111 SMNSGRNPRVVMAVNIIQDMLFRYHGMIGAN------LILGGVDCT-GSHLYTVGPYGSMDKVPY 168

  Fly   132 AGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKCVLEIQRRLII---NQRNFEVYVVDSKGMRKM 193
            ...|.|.:....||:..:...:..|.|.:|:...   ||..::.   :..|.::.|:..:|   :
Zfish   169 LAMGSGDLAAMGILEDRFKVNMDLEQAKALVSDA---IQAGIMCDLGSGNNIDLCVITKEG---V 227

  Fly   194 EAINPGSLNKES 205
            :.|.|   :|||
Zfish   228 DYIRP---HKES 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4R2NP_001259950.1 PRE1 1..194 CDD:223711 45/194 (23%)
proteasome_beta_type_2 3..194 CDD:239727 45/194 (23%)
psmb13aNP_571752.2 proteasome_beta_type_7 45..233 CDD:239732 47/202 (23%)
Pr_beta_C 241..272 CDD:315191
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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