DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4R2 and Psma3

DIOPT Version :9

Sequence 1:NP_001259950.1 Gene:Prosbeta4R2 / 33451 FlyBaseID:FBgn0031443 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_058976.1 Gene:Psma3 / 29670 RGDID:61844 Length:255 Species:Rattus norvegicus


Alignment Length:224 Identity:45/224 - (20%)
Similarity:75/224 - (33%) Gaps:61/224 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNM-----MATVGDGGDTIQFTDFISK 64
            |.:||:..|.|:...:.:....|.    ::....||  ||:     ||..|...|.....|...:
  Rat    36 TAIGIRCKDGVVFGVEKLVLSKLY----EEGSNKRL--FNVDRHVGMAVAGLLADARSLADIARE 94

  Fly    65 NLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQV------AMLLAGYDAVEGPDLHYID-- 121
            ....::.:.||::..|..|    ..:|.|:...|.|..      :.:|..|...:|..|:.||  
  Rat    95 EASNFRSNFGYNIPLKHLA----DRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPS 155

  Fly   122 --SYGAAQSINHAGHGWGSMFCGSILQRYWN---SKLSQEDAYSLMKKCVLEIQRRLIINQRNFE 181
              |||                       ||.   .|..|.....:.|..:.|:..|.::.:....
  Rat   156 GVSYG-----------------------YWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKI 197

  Fly   182 VYVVDSKGMRKMEAINPGSLNKESISLSW 210
            :|:|..:...|          ...:.|||
  Rat   198 IYIVHDEVKDK----------AFELELSW 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4R2NP_001259950.1 PRE1 1..194 CDD:223711 42/206 (20%)
proteasome_beta_type_2 3..194 CDD:239727 42/206 (20%)
Psma3NP_058976.1 proteasome_alpha_type_3 5..217 CDD:239720 45/224 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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