DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4R2 and Psmb1

DIOPT Version :9

Sequence 1:NP_001259950.1 Gene:Prosbeta4R2 / 33451 FlyBaseID:FBgn0031443 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus


Alignment Length:198 Identity:49/198 - (24%)
Similarity:81/198 - (40%) Gaps:13/198 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLY 69
            |:|.|.|.||.::||||..::.......|..|.::|:|..::...|..||.:..|..|...|.:|
Mouse    38 TVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMY 102

  Fly    70 KISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHY-IDSYGAAQSINHAG 133
            |.|:...::..:.|......|  |.|....|.|..::.|.|. ||....| .|..|:.|..:...
Mouse   103 KHSNNKAMTTGAIAAMLSTIL--YSRRFFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKA 164

  Fly   134 HGWGSMFCGSIL---------QRYWNSKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKG 189
            .|..|.....:|         |...:..|:.:.|..|:|...:....|.:.......:.:|..:|
Mouse   165 GGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 229

  Fly   190 MRK 192
            :|:
Mouse   230 IRE 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4R2NP_001259950.1 PRE1 1..194 CDD:223711 49/198 (25%)
proteasome_beta_type_2 3..194 CDD:239727 49/198 (25%)
Psmb1NP_035315.1 PRE1 18..240 CDD:223711 49/198 (25%)
proteasome_beta_type_1 29..240 CDD:239726 49/198 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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