DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta4R1 and Psma8

DIOPT Version :10

Sequence 1:NP_608698.2 Gene:Prosbeta4R1 / 33449 FlyBaseID:FBgn0031442 Length:215 Species:Drosophila melanogaster
Sequence 2:NP_001102354.1 Gene:Psma8 / 364814 RGDID:1311659 Length:250 Species:Rattus norvegicus


Alignment Length:205 Identity:55/205 - (26%)
Similarity:85/205 - (41%) Gaps:17/205 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TILGVKGTDFIILASDTMRNKSAMWLDDE--VRKTHRISDYCMMSTAGDGGDCLKFSDFILRNMD 65
            |.:|::||:.::|.   :..||...|.||  |||...:.|:..|:.||...|.............
  Rat    33 TAVGIRGTNIVVLG---VEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQ 94

  Fly    66 LYKITNGYDLTVRGAVHFIRRHLSAYLKSD--CTFQVSLLVGGYDLTSGPELHYIDYLGNSVPVR 128
            .:|:|....:||.....||......|.:|:  ..|.:|.|:.|:|....|.|:..|..|.....:
  Rat    95 SHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWK 159

  Fly   129 YGGHGAAMNFCTPILEEFYKPDM---DTQAAYDVIKKCVIELYKRFVINLRNIDLFLISKNGITK 190
            ....|.:.......||:.|..|.   |.:|    ||..:..|.:......:||:|.:|.::...|
  Rat   160 ANAIGRSAKTVREFLEKNYTEDAISNDNEA----IKLAIKALLEVVQSGGKNIELAIIRRDQPLK 220

  Fly   191 MNS---INLE 197
            |.|   |.||
  Rat   221 MFSAKEIELE 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4R1NP_608698.2 proteasome_beta_type_2 1..193 CDD:239727 51/196 (26%)
Psma8NP_001102354.1 proteasome_alpha_type_7 5..213 CDD:239724 48/186 (26%)

Return to query results.
Submit another query.