DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slh and Vps33b

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_071622.1 Gene:Vps33b / 64060 RGDID:620644 Length:617 Species:Rattus norvegicus


Alignment Length:561 Identity:111/561 - (19%)
Similarity:203/561 - (36%) Gaps:159/561 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 VNFISLE-----DDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVP-- 197
            |:.:|:|     .|:|:    :.||                 ..::::..:|..|....|..|  
  Rat   150 VDLLSMELPEFFRDYFL----EGDQ-----------------RWINTVAQALHLLSTLYGPFPNC 193

  Fly   198 --IIRCPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLLLLDRNMDLAT 260
              |.||.:.|..  :.||||::........|..:.|                 :.||||::|..|
  Rat   194 YGIGRCTKMSYD--LWRKLEEEEDSETKGRRPEIGH-----------------IFLLDRDVDFVT 239

  Fly   261 PLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKACDLDRNDRFWMTHKGSPFPTV---- 321
            .|.....|:.||.|...:....|....|..|:....|..   |:..|:.:...:...|..|    
  Rat   240 ALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSDKSLKVL---LNAEDKVFSEIRNEHFSNVFGFL 301

  Fly   322 ---AEAIQEELESYRNSEEEIKRLKTSM-----GIEGESDIAFSLVNDTTARLTNAVNSLPQLME 378
               |..:|.:.:..|..  :||::|..:     |::.|..:           |:..:.:...:|:
  Rat   302 SQKARNLQAQYDRRRGM--DIKQMKNFVSQELKGLKQEHRL-----------LSLHIGACESIMK 353

  Fly   379 KKRLIDMHTKIAT--AILNFIKARRLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLY 441
            ||...|....|.|  |:|.....|...|:.|        :.:||.:..:          :.|||.
  Rat   354 KKTKQDFQELIKTEHALLEGFNIRESTSYIE--------EHIDRQVSPI----------ESLRLM 400

  Fly   442 IIYFICAQQLPESEQERLK-EALQAAGCD-LTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVS 504
            .:..|....|...:...|| :.||:.|.: |...:.::| .|::....|....|..|...:|.|:
  Rat   401 CLLSITENGLIPKDYRSLKTQYLQSYGPEHLLTFSNLRR-AGLLTEQASGDTLTAVENKVSKLVT 464

  Fly   505 ---------MFTKLVSQGSSFVMEGVKNLVVK---RHNLPV----------------TKITEQVM 541
                     .|:.|..:.:...:....||:.:   .::|.|                .:|.|||:
  Rat   465 DKAAGKITDAFSSLAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFSGAYVPLSCRIIEQVL 529

  Fly   542 ECRSNAETD---------DYLYLDPKLLKGGEVLPKNRAPFQD----AVVFMVGGGNYIEYQNLV 593
            :.||....|         |:.:.|        :..:::|..:.    .|||: ||..:.|...|.
  Rat   530 DRRSWQGLDEVVRLLNCSDFAFTD--------MAKEDKASSESLRLILVVFL-GGCTFSEISALR 585

  Fly   594 DFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALGGEIQS 634
            ...::|     ..|.|:..:.:||:.:.::.:|    |::|
  Rat   586 FLGREK-----GYRFIFLTTAVTNSARLMEAMS----EVKS 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 109/555 (20%)
Vps33bNP_071622.1 Sec1 37..405 CDD:279352 65/328 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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