DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slh and vps45

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001243585.1 Gene:vps45 / 561653 ZFINID:ZDB-GENE-060503-526 Length:568 Species:Danio rerio


Alignment Length:662 Identity:154/662 - (23%)
Similarity:278/662 - (41%) Gaps:139/662 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTLHVQLHS-DRDSIPD 74
            |:||.::...:     ::.|..|:|:.|:....|:|.:.:..|:.:..|.|..::.| :||::..
Zfish     6 AVKQYISKMIE-----SSGPGMKVLLMDKETTSIVSVVYTQSEILQKEVYLFERIDSQNRDNMKH 65

  Fly    75 VPAIYFCLPTDENLDRIQQDFSSGLYDVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQY 139
            :.||.|..||.||::.:.|:.....|.||.:.|...|::|:::.||.|. ....||.:...|.  
Zfish    66 LKAICFLRPTKENVEHLIQELRRPKYSVYFIYFSNVISKSEVKALAEAD-EQEVVAEVQEFYG-- 127

  Fly   140 VNFISLEDDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIRCPRN 204
             :||::....|.|..|        .::|..:.:   .:::..:...|.::.::|...|:||...:
Zfish   128 -DFIAVNPHLFSLNLQ--------GVSRGRSWE---PSVLPRVTQGLTSVLLSLKKCPMIRYQLS 180

  Fly   205 SAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQR----PVLLLLDRNMDLATPLHHT 265
            |       .:.|:|.|::.......:.:         |.|::    |:||:|||:.|..|||.:.
Zfish   181 S-------DMSKRLAESVKQIITKEYEL---------FDFRKTEVPPLLLILDRSDDAITPLLNQ 229

  Fly   266 WSYQALVHDVLDLGLNLVYVEDETASAGARKKPKACDLD-RNDRFWMTHKGSPFPTVAEAIQEEL 329
            |:|||:||::|.|..|.:   |.:...|..|..:...|. .||.|:..:....|..:...|:..:
Zfish   230 WTYQAMVHELLGLNNNRI---DLSRVPGISKDLREVVLSAENDEFYANNLYLNFGEIGTNIKNLM 291

  Fly   330 ESYRNSEEEIKRLKTSMGIEGESDI-AFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTKIATAI 393
            |.::.     |:.|....:|..||: ||             |.:.||..:....:..|..:...:
Zfish   292 EDFQK-----KKPKDQQKLESISDMKAF-------------VENYPQFKKMSGTVSKHVTVVGEL 338

  Fly   394 LNFIKARRLDSFFEIEEKV------MSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQLP 452
            ...:..|:|....|:|:::      .:.|.:.|.||...|..|.    |.:||.::|.:..::..
Zfish   339 SRLVSERQLMEVSEVEQELACQNDHSNAQQMLRRLLQSPRLSEI----DAVRLVMLYALRYEKHS 399

  Fly   453 ESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGG----------GTKTVSMFT 507
            .|....|.|.|..              ||:..|...:..|....||          .|..||: |
Zfish   400 SSILPSLMEELNR--------------KGVSERHRKMVHAVVEYGGKRIRGSDLITPTDAVSI-T 449

  Fly   508 KLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETDDYLYLDPKLLKGGEVLPKNRAP 572
            |...:|    ::||:| |..:|...:....:|:::.|  .:...:.||.|..|:...        
Zfish   450 KQFFKG----LKGVEN-VYTQHQPLLHDTLDQLIKGR--LKDSQFPYLGPSSLRDRP-------- 499

  Fly   573 FQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQR-----RIIYGASTLTNARQFLKEL------- 625
             ||.:||::||..|.|...:.         |:.|     ||:.|.:.:.|.:.||:|:       
Zfish   500 -QDIIVFIIGGATYEEALTVY---------NLNRTMPGVRIVLGGTHIHNTKSFLEEVMLSVGSG 554

  Fly   626 ---SALGGEIQS 634
               |.:||...|
Zfish   555 GDRSQIGGRQMS 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 151/656 (23%)
vps45NP_001243585.1 Sec1 23..539 CDD:279352 142/611 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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