DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slh and Scfd1

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_062237.1 Gene:Scfd1 / 54350 RGDID:619828 Length:637 Species:Rattus norvegicus


Alignment Length:636 Identity:364/636 - (57%)
Similarity:484/636 - (76%) Gaps:18/636 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TLRERQINAIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTLHVQLHS 67
            ::||||..|:|:|||.|....|....|||||:|||||.|||||||::|:||||::|:|||:.|||
  Rat     9 SIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS 73

  Fly    68 DRDSIPDVPAIYFCLPTDENLDRIQQDFSSGLYDVYHLNFLAPITRSKIENLAAAALHAGCVANI 132
            |||.|.||||:||.:||:||:||:.||..:.||:.|:|||::.|:|||:|::|.|||.|..|..:
  Rat    74 DRDPIRDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQV 138

  Fly   133 HRVYDQYVNFISLEDDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVP 197
            .:|:|||:|||:||:|.|:|.:|..:.:||.||||.:..|.|||.:||:||||||..|||||.||
  Rat   139 AKVFDQYLNFITLEEDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVP 203

  Fly   198 IIRCPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLLLLDRNMDLATPL 262
            ||||.|.:||||||.||:|||||||.|||.:||..|  ..|.|.||||||:|:|:|||:||||||
  Rat   204 IIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGD--PLGTGQFSFQRPLLVLVDRNIDLATPL 266

  Fly   263 HHTWSYQALVHDVLDLGLNLVYVED----ETASAGA---RKKPKACDLDRNDRFWMTHKGSPFPT 320
            ||||:||||||||||..||.|.:|:    |.:..||   ||..|:.||...|:||..|||||||.
  Rat   267 HHTWTYQALVHDVLDFHLNRVNLEESTGVENSPTGARPKRKNKKSYDLTPVDKFWQKHKGSPFPE 331

  Fly   321 VAEAIQEELESYRNSEEEIKRLKTSMGIEGESDIAFSLVNDTTARLTNAVNSLPQLMEKKRLIDM 385
            |||::|:||||||..|:|:||||:.||:|||.:.|.|:::|.||:||:||:|||:|:|||||||:
  Rat   332 VAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDL 396

  Fly   386 HTKIATAILNFIKARRLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQ 450
            ||.:|||:|..||||:||.:||.|||:|||.|||:.|||::.|.:.|..|||:||::||:|.|||
  Rat   397 HTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDVISDPDAGTPEDKMRLFLIYYISAQQ 461

  Fly   451 LP-ESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMFTKLVSQGS 514
            .| |.:.|:.|:||..|||:|:.|.|:::||.....:   |....|....||.:.:.:::::.||
  Rat   462 APSEVDLEQYKKALTDAGCNLSPLQYIKQWKAFAKMA---STPASYGNTTTKPMGLLSRVMNTGS 523

  Fly   515 SFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETDDYLYLDPKLLKGGE-VLPKNRAPFQDAVV 578
            .||||||||||:|:.|||||:|.:.:||.:||.|||||.|.|||:|:..: .:|:|::|||:|:|
  Rat   524 QFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIV 588

  Fly   579 FMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALG 629
            |:||||||||||||||:||.||    .:.|:||.|.:.||.||:|:||.||
  Rat   589 FVVGGGNYIEYQNLVDYIKGKQ----GKHILYGCSEIFNATQFIKQLSQLG 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 364/636 (57%)
Scfd1NP_062237.1 Sec1 39..457 CDD:279352 255/419 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335374
Domainoid 1 1.000 685 1.000 Domainoid score I127
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5650
Inparanoid 1 1.050 720 1.000 Inparanoid score I604
OMA 1 1.010 - - QHG53926
OrthoDB 1 1.010 - - D168850at33208
OrthoFinder 1 1.000 - - FOG0004255
OrthoInspector 1 1.000 - - oto97830
orthoMCL 1 0.900 - - OOG6_101825
Panther 1 1.100 - - LDO PTHR11679
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3513
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.910

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