DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slh and Stxbp1

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:XP_006234001.1 Gene:Stxbp1 / 25558 RGDID:3785 Length:603 Species:Rattus norvegicus


Alignment Length:671 Identity:136/671 - (20%)
Similarity:271/671 - (40%) Gaps:134/671 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KALAAEPV-------------WKILIYDRVGQDIISPIISIKELRELGVTLHVQLHSDRDSIPDV 75
            ||:..|.:             ||:|:.|::...::|....:.::...|:|:...::..|:.:|.:
  Rat     7 KAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSL 71

  Fly    76 PAIYFCLPTDENLDRIQQDFS---SGLYDVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYD 137
            .|:|...|:::::..:..||.   :..|...|:.|    |.|..:.|....:.:.....|..:.:
  Rat    72 EAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF----TDSCPDALFNELVKSRAAKVIKTLTE 132

  Fly   138 QYVNFISLEDDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIRCP 202
            ..:.|:..|...:.|....|.| |:|:.::|..::..:|.|.:.|.    .|..||...|.:|..
  Rat   133 INIAFLPYESQVYSLDSADSFQ-SFYSPHKAQMKNPILERLAEQIA----TLCATLKEYPAVRYR 192

  Fly   203 ---RNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLLLLDRNMDLATPLHH 264
               :::|  ::|:.::.||     ||    :..|....|.|. ...|..||:|||..|.::|:.|
  Rat   193 GEYKDNA--LLAQLIQDKL-----DA----YKADDPTMGEGP-DKARSQLLILDRGFDPSSPVLH 245

  Fly   265 TWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKACDLDRNDRFWMTHKGSPFPTVAEAIQEEL 329
            ..::||:.:|:|.:. |.|| :.||:..| ..:.|...||.:|..|:..:......|::.:...|
  Rat   246 ELTFQAMSYDLLPIE-NDVY-KYETSGIG-EARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSL 307

  Fly   330 ESYRNSEEEIKRLKTSMGIEGESDIAFSLVNDTTAR-LTNAVNSLPQLMEKKRLIDMHTKIATAI 393
            :.:.:|    ||:.|     ||.         ||.| |:..:..:||..::......|..:|...
  Rat   308 KDFSSS----KRMNT-----GEK---------TTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDC 354

  Fly   394 LNFIKARRLDSFFEIE-----------EKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFIC 447
            :...:. .:|....:|           ||:....   |.::.:|.|... ...||:|:.::|...
  Rat   355 MKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPM---RAIVPILLDANV-STYDKIRIILLYIFL 414

  Fly   448 AQQLPESEQERLKEALQAAGCD---LTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMFTKL 509
            ...:.|....:|.:..|....|   :|.:|::    |:    |.::.:|.......:.....::.
  Rat   415 KNGITEENLNKLIQHAQIPPEDSEIITNMAHL----GV----PIVTDSTLRRRSKPERKERISEQ 471

  Fly   510 VSQGSSFVMEGVKNLVVKRHNLPVTKITEQVME--CRSNAETDDYLYLDPKLLKGGEVLP----- 567
            ..|.|.:                 |.|.:.:||  .....:|..|.|:..:.........     
  Rat   472 TYQLSRW-----------------TPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARY 519

  Fly   568 ----KNRAPFQ-----DAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFL- 622
                ||:||.:     ..::|::||.:..|.:...:..:    :|.:..::.|::.:....:|| 
  Rat   520 GHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQ----ANGKWEVLIGSTHILTPTKFLM 580

  Fly   623 -------KELSALGGEIQSPT 636
                   :|.|.:..|.|:||
  Rat   581 DLRHPDFRESSRVSFEDQAPT 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 132/663 (20%)
Stxbp1XP_006234001.1 Sec1 29..575 CDD:395791 124/621 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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