DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slh and Vps45

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_038869.1 Gene:Vps45 / 22365 MGIID:891965 Length:570 Species:Mus musculus


Alignment Length:659 Identity:153/659 - (23%)
Similarity:275/659 - (41%) Gaps:130/659 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTLHVQLHS-DRDSIPD 74
            |:||.::...:.     :.|..|:|:.|:....|:|.:.:..|:.:..|.|..::.| :|:.:..
Mouse     6 AVKQYISKMIED-----SGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKH 65

  Fly    75 VPAIYFCLPTDENLDRIQQDFSSGLYDVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQY 139
            :.||.|..||.||::.:.|:.....|.:|.:.|...|::|.:::||.|. ....||.:...|..|
Mouse    66 LKAICFLRPTKENVEYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEAD-EQEVVAEVQEFYGDY 129

  Fly   140 VNFISLEDDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIRCPRN 204
               |::....|.|.          .:.....|:.: .|.:......|.||.::|...|:||...:
Mouse   130 ---IAVNPHLFSLN----------ILGCCQGRNWD-PAQLSRTTQGLTALLLSLKKCPMIRYQLS 180

  Fly   205 SAA-----EMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQR----PVLLLLDRNMDLAT 260
            |.|     |.|.:.:.|:..                     :|.|:|    |:||:|||..|..|
Mouse   181 SEAAKRLGECVKQVISKEYE---------------------LFEFRRTEVPPLLLILDRCDDAIT 224

  Fly   261 PLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKACDLD-RNDRFWMTHKGSPFPTVAEA 324
            ||.:.|:|||:||::|.:..|.:   |.:...|..|..:...|. .||.|:..:....|..:...
Mouse   225 PLLNQWTYQAMVHELLGINNNRI---DLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSN 286

  Fly   325 IQEELESYRNSEEEIKRLKTSMGIEGESDI-AFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTK 388
            |:..:|.::.     ||.|....:|..:|: ||             |.:.||..:....:..|..
Mouse   287 IKNLMEDFQK-----KRPKEQQKLESIADMKAF-------------VENYPQFKKMSGTVSKHVT 333

  Fly   389 IATAILNFIKARRLDSFFEIEEKVMSK-------QTLDRPLLDLLRDGEFGQAEDKLRLYIIYFI 446
            :...:...:..|.|....|:|:::..:       |.:.| ||...:..||    |.:||.::|.:
Mouse   334 VVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKR-LLQNPKVTEF----DAVRLVMLYAL 393

  Fly   447 CAQQLPESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMF----- 506
                   ..:.....:|.....||.:....::::.:      :|...:|.|...:...:|     
Mouse   394 -------HYERHSSNSLPGLIVDLRSKGVAEKYRKL------VSAVVEYGGKRVRGSDLFSPKDA 445

  Fly   507 ---TKLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETDDYLYLDPKLLKGGEVLPK 568
               ||...:|    ::||:| |..:|...:.:..:.:::.|  .:.:.|.||.|..|:...    
Mouse   446 VAITKQFLKG----LKGVEN-VYTQHQPFLHETLDHLIKGR--LKENLYPYLGPSTLRDRP---- 499

  Fly   569 NRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALG---G 630
                 ||.:||::||..|.|  .|..:...:.|..|  ||:.|.:|:.|.:.||:|:.|.|   .
Mouse   500 -----QDIIVFIIGGATYEE--ALTVYNLNRTTPGV--RIVLGGTTIHNTKSFLEEVLASGLHSR 555

  Fly   631 EIQSPTATS 639
            ..:|..|||
Mouse   556 SRESSQATS 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 149/648 (23%)
Vps45NP_038869.1 Sec1 23..539 CDD:279352 139/610 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.