DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slh and vps-33.2

DIOPT Version :9

Sequence 1:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_495342.2 Gene:vps-33.2 / 174095 WormBaseID:WBGene00016960 Length:617 Species:Caenorhabditis elegans


Alignment Length:712 Identity:133/712 - (18%)
Similarity:249/712 - (34%) Gaps:183/712 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ERQINAIKQMLNLNSQQP--KALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTLHVQLHSD 68
            |.:|:....:|.:..|:.  ..|...|..|.|..|:.....:..|.:..:::..||..  .:|.|
 Worm     7 ELEIDETLHLLRMVMQREFIHYLETLPGTKELFIDKCLLRPLDMIATSSDMKRHGVKR--IMHFD 69

  Fly    69 RDSIPDV------PAIYFCLPTDEN----LDRIQQDFSSGLYDVYHLNFLAPITRSKIENLAAAA 123
            ....|.|      ..::|..|..||    ::.:::...:....|...|       .::|....|.
 Worm    70 LQKSPQVWNIEIDQRVFFLRPNVENARKIVEYVEESSENRSICVIWCN-------RQLEECDLAF 127

  Fly   124 LHAGCVANIHRVYDQYVNFISLEDDFFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFA 188
            ..:|.:.:|.:: ...:..:.||.|.|.|:|.:|.|...:::  ||                   
 Worm   128 ESSGVIGHITQL-SLNMCLLPLESDLFSLQHVESAQPDLFSV--AN------------------- 170

  Fly   189 LFVTLGNV-PIIRCPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPV--LL 250
            :||.|.|: .:|.......:|          .:|||:....|...:..:|..     .:|:  |.
 Worm   171 MFVALQNLYGVIPTVYGLGSE----------SKNLWNLVHALCSSNELRARP-----DQPISHLF 220

  Fly   251 LLDRNMDLATPLHHTWSYQALVHD--VLDLGLNLVYVEDETASAGARKKPKACDLDRNDRFWMTH 313
            |.||.:|....|....||:.|:|:  .:|.| .|.:..|      .||:.:...||         
 Worm   221 LFDRQLDPVPVLLTGASYEGLLHEFFTIDCG-KLAFPVD------LRKQVQTGPLD--------- 269

  Fly   314 KGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEGESDIAFSLVN-DTTARLT---NAVNSLP 374
                |..:....:|:.|:::.:..:..:|      :...||..|:.| ..||.|.   :...|:.
 Worm   270 ----FDWIEINPEEDKEAHQQNRGDTVKL------DNCEDIFASIRNKHVTAALEFLHSKAKSIQ 324

  Fly   375 QLMEKKRLID------------------------MHTKIATAILNFIKARRLDSFFEIEEK---- 411
            :.:||..:||                        :|......::|.:|.....:.|::|.:    
 Worm   325 KSIEKSSMIDDVADYRNFVEKDLRALKKDHKHCELHINACEMMMNKVKMEDYRTMFKLEHEMLLG 389

  Fly   412 -----------------------VMSKQTLDRPLLDLLRDGEFGQ-AEDKLRLYIIYFICAQQLP 452
                                   |:|..:|....||.:.|..:.: .|..|:.|....:.  :|.
 Worm   390 TVTHEEYFDFVFERVPMRSCRDVVLSMMSLASLKLDGVPDDTYNEFVEMYLQKYGYEHMF--ELQ 452

  Fly   453 ESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMFTKLVSQGSSFV 517
            .....|:..|.:....|.|.....:.|:.:..:...:.        |.:.:.|..   ....|:|
 Worm   453 NLRNSRVIYARRHIAHDRTISERARTWETLARKFRIVK--------GNEPMDMSN---PSDMSYV 506

  Fly   518 MEGVKNLVVKRHNLPVTKITEQVMECRSN-AETDDYLYLDPKLLKGGEVLPKNRAP----FQDAV 577
            ...       |.:..:.||.|..::...| ||.:..:..|..|::....:..:|.|    .:..:
 Worm   507 FGA-------RISPLLCKIVEDTIDHGWNQAEYERIIGKDKVLVEENTYIAADRRPDNRTRKAIM 564

  Fly   578 VFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALGGEIQSPTATS 639
            ||:.||..|.|...|.....||..     ||:...:.:...|::|        |:::..|:|
 Worm   565 VFVNGGITYWEVAALRLLAIQKNF-----RILICTTHVIKKREYL--------EVRAKDASS 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlhNP_001137769.2 Sec1 1..630 CDD:301618 130/701 (19%)
vps-33.2NP_495342.2 Sec1 36..598 CDD:307231 122/658 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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