DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and gdf10b

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001165060.2 Gene:gdf10b / 794493 ZFINID:ZDB-GENE-120316-1 Length:385 Species:Danio rerio


Alignment Length:281 Identity:61/281 - (21%)
Similarity:107/281 - (38%) Gaps:84/281 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 ASASTESHQSSSIE----SIFVEEPTLVLDREVASINVPANAKAI-IAEQGPSTYSKEALIKDK- 215
            |....|..:|.|:|    :.|..|.|.....:..:::...:...| ::.:.||.:.:.|.:::: 
Zfish    96 ADVGQEISESLSVEFTYSTDFYNEKTHKCTLDFPAVDASVHKDVIEVSFKHPSAFYERASLEEEF 160

  Fly   216 -----LKPDPSTLVEI-EKSLLSLFN------MKRPPKIDRSKII--IPEPMKKLYAEIMGHELD 266
                 |.|..|::..: |||..|.|.      .:....:::|.::  :....:...|.|..|...
Zfish   161 EYTIILNPSSSSVPHLQEKSSHSCFEDELGYLCETKVHVNQSVVVQWVVLKFEGKIASIPVHTYK 225

  Fly   267 SVNIPKPGLLTKSANT-------------------VRSFTHKD-SKIDDRFPHHHRFRLHFDVKS 311
            :|::|:  |...||.|                   |..|.||: ||| .:.|...|     ::.:
Zfish   226 NVSVPQ--LEPASAKTEWIAAILCGSIALLFIVFVVLWFIHKNFSKI-PKVPSILR-----NIVT 282

  Fly   312 IPADEKLKAAELQLTRDALSQQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLD------ 370
            .|........|         ...|:|.:||..|  .||:|:         .||   |||      
Zfish   283 RPYSTPYSQPE---------SPHVSSMTSATHT--PVLLYN---------NEP---LLDFVHDEV 324

  Fly   371 TKTVRLNSTDTV--SLDVQPA 389
            :||     |||:  :.:.:||
Zfish   325 SKT-----TDTLVNTEEEEPA 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 46/202 (23%)
TGFB 487..588 CDD:214556
gdf10bNP_001165060.2 FN3 21..104 CDD:328772 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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