DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpp and Gdf3

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001103141.1 Gene:Gdf3 / 500311 RGDID:1564178 Length:366 Species:Rattus norvegicus


Alignment Length:368 Identity:95/368 - (25%)
Similarity:164/368 - (44%) Gaps:44/368 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 LSLFNMKRPPKIDRSKIIIPEPMKKLY-----AEIMGHELDSVNIPKPGLLTKSANTVRSFTHKD 290
            |....:|:.|...|.: .:|..::|:.     |...|...|...:.:.|:   ..|.:|....:.
  Rat    31 LQFLGLKKAPSPHRFQ-PVPRILRKIIRARETAAASGASQDLCYVKELGV---RGNLLRLLPDQG 91

  Fly   291 SKIDDRFPHHH----RFRLHFDVKSIPADEKLKAAELQLTRDALSQQVVASRSSANRTRYQVLVY 351
            ..::.:.|...    :..|.|::.::....||..|:|.|.....|...:       :....|.|.
  Rat    92 FFLNTQKPSQDGSCLQKVLSFNLSAVKEKGKLTMAQLILHLGPRSYHYL-------QLELVVAVS 149

  Fly   352 DITRVGVRGQREPSY-LLLDTKTVRLNSTDTVSLDVQPAVDRWLASPQRNYGLLVEVRTVRSLKP 415
            .:...||.|:..|.. .||..|:| |....::..::|..|..|.....:|..|.:|:.....   
  Rat   150 VVQDRGVWGRSHPKLGRLLVQKSV-LGPQGSLQFNLQGVVKDWNRHQLKNLDLYLEILVKED--- 210

  Fly   416 APHHHVRLRRSADEAHERWQHK-QPLLFTYTDDGRHKARSIRDVSGGEGGGKGGRNKRQPRRPTR 479
               .:.|:....|....:..|. ...|...|.:.:|...|.|              |::...|..
  Rat   211 ---RYSRVNAQLDNPCNQLMHSLHASLLVVTLNLKHCHPSSR--------------KKRAAIPIP 258

  Fly   480 RKNHDDTCRRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMN 544
            :....:.|.||.|:|:|.|:||..|::||.|:.|.||||.|||.:..:.||:|:|.:|.|::..:
  Rat   259 KGLCRNLCHRHQLFVNFQDLGWHKWVIAPKGFMANYCHGDCPFTMTTYLNSSNYAFMQALMHMAD 323

  Fly   545 PGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGC 587
            | :||||.|:||:|..::|||.:::..|:|::|::|.|..|||
  Rat   324 P-RVPKAVCIPTKLSPISMLYQDNEKNVILRHYEDMVVDECGC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 42/223 (19%)
TGFB 487..588 CDD:214556 47/101 (47%)
Gdf3NP_001103141.1 TGFB 266..366 CDD:214556 47/101 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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