DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and amh

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001007780.1 Gene:amh / 493624 ZFINID:ZDB-GENE-050706-192 Length:549 Species:Danio rerio


Alignment Length:616 Identity:136/616 - (22%)
Similarity:215/616 - (34%) Gaps:197/616 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 NPFSEPASFSDSDK--------SHRSKTNKKPSKSDANRQFNEVHKPRTDQLE------------ 116
            ||...|.|..:.|:        .||.:...:.:..|.  .||:..|...:.|.            
Zfish    32 NPKVNPLSELNGDQLEVRDLACVHRQQPTDQHATEDT--PFNKEQKTLNEFLSALKSAGELGKMD 94

  Fly   117 -----NSKNKSKQLVNKPNHNKMAVKEQRSHHKKSHHHRSHQPKQASASTESHQSSSIESIFVEE 176
                 :|:.:|.|:    :|...:|.:::|..|..|           |:.:...:.:.|.|.:  
Zfish    95 FLGTCSSETQSSQV----SHLVQSVLQKQSGLKGVH-----------ATEDIWDADNEEGITL-- 142

  Fly   177 PTLVLDREVASINVPANAKAIIAEQGPST----YSKEALIKDKLK---------PDPSTLVEIEK 228
             ||...:.    ::||         ||::    :|...:..|.|:         |:..|:...|.
Zfish   143 -TLTFPKH----SLPA---------GPASVMLLFSVNPVKGDSLRVQFNSQSIHPNTQTVCISES 193

  Fly   229 SLLSL---------FNMKRPPKIDRSKIIIPEPMKKLYAEIMGHELDSVNIPKPGLLTKSANTVR 284
            :...:         .::|....::.|   :.:..:||...    ||:.|.:.|   :..|:.|::
Zfish   194 TRFLIVTGGWSHGHIHLKLKTMVETS---MDDNRRKLSVS----ELNEVLMRK---VDGSSTTIK 248

  Fly   285 SFTHKDSKIDDRFPHHHRFRLHFDVKSIPADEKLKA------AELQ-LTRDALSQQVVASRSSAN 342
            ......|.:|:  ||..|.|       ||.||:|.:      .||| ..||.|.|    |:|:. 
Zfish   249 PVLLFLSDLDE--PHLKRHR-------IPQDERLPSRTYLFLCELQKFLRDILPQ----SKSTT- 299

  Fly   343 RTRYQVLVYDITRVGVRGQREPSYLLLDT----KTVRLNSTDTVSL------DVQPAVDRWLASP 397
                             .|.:||.:.|||    ..:||..:.|.||      ...|.|   ...|
Zfish   300 -----------------PQDDPSAVSLDTLHSLPPLRLGVSSTESLLSGLVNSSTPTV---FVFP 344

  Fly   398 QRNYGLLVEVRTVRSLKPAPHHHVRLRRSADEAH-------------ERWQHKQPLLFTYTDDGR 449
            ||..||  :...|.....:|...| ||...|||.             :|.| |...|...:.||.
Zfish   345 QRQQGL--QTHRVEVTLDSPLLSV-LRMRLDEAMAQVKQQEAGRKMIDRLQ-KLTELSALSPDGE 405

  Fly   450 --------HKARSIRDV----------SGGEGGGKGGRNKRQPRRPTRRKNHDDTCRRHSLYVDF 496
                    ||....|.|          |..|    ..|.:|..|......:..:.|...||.|..
Zfish   406 DSEAATKDHKEAQYRSVLLLKALQMVLSNWE----SERAQRAARADEDGPSASNQCHLQSLSVSL 466

  Fly   497 SDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNPGKVP---KACCVPTQL 558
            .     .:.:.|...:...|.|.|.|||.   |:.||||   |:|:......|   ..||||.:.
Zfish   467 R-----KFFLEPSRANINNCEGTCGFPLN---NANNHAV---LLNSHIQSGQPVNRSLCCVPVEY 520

  Fly   559 DSVAMLYLNDQSTVVLKNYQ-EMTVVGCGCR 588
            |.:.::.|..::|.:  :|: .:....|.||
Zfish   521 DDLCVIELESETTNI--SYKTNVVATKCECR 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 61/257 (24%)
TGFB 487..588 CDD:214556 28/104 (27%)
amhNP_001007780.1 AMH_N 74..439 CDD:282552 93/447 (21%)
TGF_beta 455..548 CDD:278448 28/105 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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