DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and bmp4

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_571417.1 Gene:bmp4 / 30612 ZFINID:ZDB-GENE-980528-2059 Length:400 Species:Danio rerio


Alignment Length:408 Identity:165/408 - (40%)
Similarity:233/408 - (57%) Gaps:47/408 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 GPSTYSKEALIKDKLKPDPST---------LVEIEKSLLSLFNMKRPPKIDRSKIIIPEPMKKLY 257
            |.|:|:  :||.::.|...|.         |.:.|.:||.:|.::|.|:...| .::|:.:..||
Zfish    19 GESSYA--SLIPEEGKKKASALHLAQSHELLRDFEATLLHMFGLQRRPRPSHS-AVVPQYLLDLY 80

  Fly   258 AEIMGHELDS-----VNIPKPGLLTKSANTVRSFTHKD--SKIDDRFPHHHRFRLHFDVKSIPAD 315
             .:...||:.     |:...|...|..|||||.|.|::  .::..........|..|::.|||.|
Zfish    81 -RLQSGELEEAGAQHVSFDYPERSTSRANTVRGFHHEEHLEELQSDGSQETPLRFVFNLSSIPED 144

  Fly   316 EKLKAAELQLTRDALSQQVVASRSSANRT----RYQVLVYDITRVGVRGQREPSYLLLDTKTVRL 376
            |.:..|||::.|    ||:..:.|..::|    .:::.:|::.:....||....  ||||:.||.
Zfish   145 ELISTAELRVYR----QQIDDAFSDPDQTGDHGLHRINIYEVLKAPREGQLITQ--LLDTRLVRH 203

  Fly   377 NSTDTVSLDVQPAVDRWLASPQRNYGLLVEVRTVRSLKPAPHHHVRLRRSADE-AHERWQHKQPL 440
            |::...|.||.|||.||....:.|:||.|||..::........|||:.||... ..|.|...:||
Zfish   204 NTSKWESFDVSPAVLRWTQEKRSNHGLAVEVVQMKRNPVQKGRHVRVSRSVHPLPDEEWDQLRPL 268

  Fly   441 LFTYTDDGRHKARSIRDVSGGEGGGKGGRNKRQPRRPTRRKNHDDTCRRHSLYVDFSDVGWDDWI 505
            |.|:..||:....:             .|.||.|::..|::|.:  ||||:||||||||||:|||
Zfish   269 LVTFGHDGKSHPLT-------------RRAKRSPKQRGRKRNRN--CRRHALYVDFSDVGWNDWI 318

  Fly   506 VAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNPGKVPKACCVPTQLDSVAMLYLNDQS 570
            |||.||.||||||:||||||||.||||||:||||||::|. .:||||||||:|.:::||||::..
Zfish   319 VAPPGYQAYYCHGECPFPLADHLNSTNHAIVQTLVNSVNT-NIPKACCVPTELSAISMLYLDETD 382

  Fly   571 TVVLKNYQEMTVVGCGCR 588
            .|||||||||.|.|||||
Zfish   383 RVVLKNYQEMVVEGCGCR 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 71/230 (31%)
TGFB 487..588 CDD:214556 75/100 (75%)
bmp4NP_571417.1 TGFb_propeptide 35..272 CDD:279078 73/244 (30%)
TGFB 300..400 CDD:214556 75/100 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 177 1.000 Domainoid score I3545
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 273 1.000 Inparanoid score I2952
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002405
OrthoInspector 1 1.000 - - otm24629
orthoMCL 1 0.900 - - OOG6_105711
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3241
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.890

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