DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and lft2

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_571036.1 Gene:lft2 / 30146 ZFINID:ZDB-GENE-990630-11 Length:362 Species:Danio rerio


Alignment Length:390 Identity:90/390 - (23%)
Similarity:155/390 - (39%) Gaps:86/390 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 EIEKSLLSLFNMKRPPKI---DRSKIIIPEPMKKLYAEI--MGHELDSVNIPKPGLLTKSANTVR 284
            :|:::||....:..||:|   |...:::|..:|..|..:  :.|:....::|      ..|..:|
Zfish    24 DIKQALLQKLGLTEPPRIQKRDLENLVVPAHIKSKYLSMLKLHHQRRRRSLP------SLAGILR 82

  Fly   285 SFTHKDSKI--DDRFPHHHRFRLHFDVKS-IPADEKLKAAELQLTRDALSQQVVASRSSANRTRY 346
            .. |.::.|  :.::....|.||.||::: :..:.::..|||:     |.|....|.|...|..:
Zfish    83 GI-HGNADITGEIKYSDTTRQRLVFDMEARLQENTEVTMAELK-----LFQTAAQSPSKPERRHH 141

  Fly   347 QVLVYDITRVGV-------RGQREPSYLLLDTKTVRLNSTDTVSLDVQPAVDRWLASPQRNYGLL 404
            :.:.:  .||.:       .|....|  |||::.|.::.:...|.||..|:..|..| |:...|.
Zfish   142 RPINH--ARVSIYWVEVLENGSNRTS--LLDSRLVPIHESGWRSFDVTQAIHYWSKS-QKKAPLH 201

  Fly   405 VEVRTVRSLKP---APHHHVRLRRSADEAHERWQHKQ---PLLFTYTDDGRHKARSIRDVSGGEG 463
            :||.| ...:|   |.....|:|.:..:..|....|.   |.|..||.|        .|..|.:|
Zfish   202 LEVWT-EGERPGSYAAEMAKRVRFATQDPKENTLEKDMGAPELVLYTLD--------LDEYGSQG 257

  Fly   464 GGKGGRNKRQPRRPTRRKNHDDTCRRHSLYVDFSDVGWDD-WIVAPLGYDAYYCHGKCPFPLADH 527
            ......|..:             |.|...:::|.::.|.. ||:.|.||.|:.|.|.|..|....
Zfish   258 NCNSSPNSSK-------------CCREEHFINFRELTWTQYWIIEPAGYQAFRCAGGCKQPKRGF 309

  Fly   528 FNSTNHAVVQTLVNNMNPGKVPKACCVPTQLDS--VAMLYL---NDQSTVVLKNYQEMTVVGCGC 587
            :                 |...:.|.|   ::|  :.|:||   .|.:.:.:..:..|.|..|||
Zfish   310 Y-----------------GYGQRTCAV---MESAPLPMMYLVKKGDYTEIEVAEFPNMIVEKCGC 354

  Fly   588  587
            Zfish   355  354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 56/239 (23%)
TGFB 487..588 CDD:214556 27/107 (25%)
lft2NP_571036.1 TGFb_propeptide 15..204 CDD:366248 45/196 (23%)
TGF_beta_LEFTY1_2 267..354 CDD:381636 25/119 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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