DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Gdf15

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_062089.1 Gene:Gdf15 / 29455 RGDID:2674 Length:303 Species:Rattus norvegicus


Alignment Length:308 Identity:78/308 - (25%)
Similarity:126/308 - (40%) Gaps:69/308 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 DVKSIPADEKLKAAELQLTRDALSQQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLDTK 372
            |..::| :::...:|.||..|.|            |.|:|.|   ::|:.....||.|       
  Rat    36 DALALP-EQRRSLSESQLNPDEL------------RGRFQDL---LSRLHANQSREDS------- 77

  Fly   373 TVRLNSTDTVSLDVQPAVDRWLASPQRNYG----LLVEVRTVRSLKPAPHHHVRLRRS---ADEA 430
                ||..|    ..|||.  :.||:...|    ||:.|......:..|..: |:.|:   ...:
  Rat    78 ----NSEPT----PDPAVR--ILSPEVRLGSHGRLLLRVNRASLTQGLPEAY-RVHRALLLLTPS 131

  Fly   431 HERWQHKQPLLFTYTDDGRHKARSIR-------DV----SGG--------EGGGKGGRNKRQPRR 476
            ...|...:||....:..|.| ||::|       |:    |||        ...|:|.|:.....|
  Rat   132 SRPWDITRPLQRAISLQGPH-ARALRLRLAPPPDLAVLPSGGARLELHLRSAAGRGRRSAHLHPR 195

  Fly   477 PTRRKNHDDTCRRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADH-FNSTN-HAVVQTL 539
            .:........|...::.....|:||.||:::|.......|.|:||     | :.|.| ||:::..
  Rat   196 DSCPLGPGRCCHLETVQATLEDLGWSDWVLSPRQLQLSMCVGECP-----HLYRSANTHALIKAR 255

  Fly   540 VNNMNPGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGC 587
            ::.:.|.:||..||||:....|.:::..| |.|.|:.|.::...||.|
  Rat   256 LHGLQPDRVPAPCCVPSSYTPVVLMHRTD-SGVSLQTYDDLVAQGCHC 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 33/142 (23%)
TGFB 487..588 CDD:214556 32/103 (31%)
Gdf15NP_062089.1 TGF_beta 204..302 CDD:278448 31/103 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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