DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Nodal

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001099864.1 Gene:Nodal / 294503 RGDID:1305994 Length:354 Species:Rattus norvegicus


Alignment Length:377 Identity:92/377 - (24%)
Similarity:156/377 - (41%) Gaps:101/377 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 PEP---MKKLYAEIMGHELDSVNIPKPGLLTKSANTVRSFTHKDSKIDDRFPHHHRFRLHFDVKS 311
            |.|   |..||.:           |.|     .|:.:||...:|..:..:     .:...||...
  Rat    39 PSPLAYMLSLYRD-----------PLP-----RADIIRSLQAQDVDVTGQ-----NWTFTFDFSF 82

  Fly   312 IPADEKLKAAELQLTRDALSQQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLDTKTVRL 376
            :..:|.|..|||:|       |:::...|..:....:.::...:..  .:::|:..|......|:
  Rat    83 LSQEEDLVWAELRL-------QLLSPMDSPTKGPLTIDIFHQAKPD--PEQDPADCLERVWMERI 138

  Fly   377 NST--------DTVSLDVQPAVDRWLASPQRNYGLLVEVRTVRSLKPAPHHHVRLRRSADEAHER 433
            ..|        |:..|:|...:.:||..|             |:|:         ::.:.:|.:.
  Rat   139 TVTPSQVTFASDSTVLEVTKPLSKWLKDP-------------RALE---------KQVSSQAGKC 181

  Fly   434 W--QHKQP-------LLFTYTDDGRHKARSIRDVSGG-------------------EGGGKGGRN 470
            |  .|.||       :|..|:    ::.:..|.:.|.                   |..| .||.
  Rat   182 WHQSHTQPVPVTSTSVLMLYS----NRPQEQRQLGGATLLWEAESSWRAQEGQLSVERSG-WGRR 241

  Fly   471 KRQPRRPTRRKNHDDTCRRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAV 535
            :|:...|.|    ...|||....|||:.:||..||:.|..|:||.|.|:||.|:.:.|:.||||.
  Rat   242 QRRHHLPDR----SQLCRRVKFQVDFNLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAY 302

  Fly   536 VQTLVNNMNPGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGC 587
            :|:|:....|.:||..||.|.:...::|||: |...|:|:::::|.|..|||
  Rat   303 IQSLLKRYQPHRVPSTCCAPVKTKPLSMLYV-DNGRVLLEHHKDMIVEECGC 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 39/213 (18%)
TGFB 487..588 CDD:214556 43/101 (43%)
NodalNP_001099864.1 TGFb_propeptide 33..169 CDD:279078 31/172 (18%)
TGFB 254..353 CDD:214556 41/99 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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