DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Gdf6

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_038554.1 Gene:Gdf6 / 242316 MGIID:95689 Length:454 Species:Mus musculus


Alignment Length:498 Identity:135/498 - (27%)
Similarity:203/498 - (40%) Gaps:131/498 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 KQASASTESHQSSSIESIFVEEPTLVLDREVASINVPANAKAIIAEQGPSTYSKEALIKDKLKPD 219
            :|||.|:.|..|:.::|          .::|.:           .::|....:.:...:.:..|:
Mouse    24 QQASISSSSSSSTELDS----------TKDVGN-----------RKEGKMQRTPQESAEGRTPPE 67

  Fly   220 PSTLVEIEKSLLSLFNMKRPP-------KIDRSKIIIP-EPMKKLY-----AEIMGHELDSVNIP 271
            ....   :|.|     .:|||       ...|...::| |.|..:|     ||.:|.......  
Mouse    68 HGLR---QKDL-----RRRPPGQHQGQEPPGRGLRVVPHEYMLSIYKTYSIAEKLGINASFFQ-- 122

  Fly   272 KPGLLTKSANTVRSFTHKDSKIDDRFPHH--HRFRLHFDVKSIPADEKLKAAELQLTRDA----- 329
                .:|||||:.||.  |..:|| ..|.  .|.:..|||.::...|:|..|||:|.|.|     
Mouse   123 ----SSKSANTITSFV--DRGLDD-LSHTPLRRQKYLFDVSTLSDKEELVGAELRLYRQAPPTPW 180

  Fly   330 ------LSQQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLDTKTVRLNSTDTVSLDVQP 388
                  |..|:....|.                          ||||.:|:..........:|  
Mouse   181 GLPARPLHLQLFPCLSP--------------------------LLLDARTLDPQGPTQAGWEV-- 217

  Fly   389 AVDRWLA-SPQRNYGLLVEVRT-----------VRSLKPAPHHHVRLRRSADEAHERWQHKQPLL 441
             .|.|.. .||....|.:|:|.           .|:..|.....:.||........|...::.||
Mouse   218 -FDVWQGLRPQPWKQLCLELRAAWGELDAGDTGARARGPQQPPPLDLRSLGFGRRVRPPQERALL 281

  Fly   442 FTYTDDGR-------HKARSIRDVSGGEGGGKG--------------GRNKRQPRRPTRR-KNHD 484
            ..:|...|       |:.....:.:|.||....              ||.:|:....:|. |.|.
Mouse   282 VVFTRSQRKNLFTEMHEQLGSAEAAGAEGSWPAPSGSPDAGSWLPSPGRRRRRTAFASRHGKRHG 346

  Fly   485 D----TCRRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNP 545
            .    .|.|..|:|:|.::||||||:|||.|:||:|.|.|.|||..|...||||::|||:|:|:|
Mouse   347 KKSRLRCSRKPLHVNFKELGWDDWIIAPLEYEAYHCEGVCDFPLRSHLEPTNHAIIQTLMNSMDP 411

  Fly   546 GKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGCR 588
            |..|.:|||||:|..:::||::..:.||.|.|::|.|..||||
Mouse   412 GSTPPSCCVPTKLTPISILYIDAGNNVVYKQYEDMVVESCGCR 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 59/256 (23%)
TGFB 487..588 CDD:214556 52/100 (52%)
Gdf6NP_038554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..93 13/93 (14%)
TGFb_propeptide 75..284 CDD:279078 58/251 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..268 4/20 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 303..350 9/46 (20%)
TGF_beta 352..453 CDD:278448 51/100 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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