DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Gdf9

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_032136.2 Gene:Gdf9 / 14566 MGIID:95692 Length:441 Species:Mus musculus


Alignment Length:491 Identity:115/491 - (23%)
Similarity:174/491 - (35%) Gaps:133/491 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 ASASTESHQSSSIESIFVE-EP---TLVLDREVASINVPANAKAIIAEQGPSTYSKEALIKDKLK 217
            :.||||..||.:.|::..| :|   .|.:|....|..:|...|.:...:|.:         .||:
Mouse    25 SQASTEESQSGASENVESEADPWSLLLPVDGTDRSGLLPPLFKVLSDRRGET---------PKLQ 80

  Fly   218 PDPSTLVEIEKSLLSLFNMKRPPKIDRSKIIIPEPMKKLYAEIMGHELDSVNIPKPGLLTKSANT 282
            ||...|..                           |||||......|    .:|||. .:...||
Mouse    81 PDSRALYY---------------------------MKKLYKTYATKE----GVPKPS-RSHLYNT 113

  Fly   283 VRSFT-------HKDSKIDDRFPHHHRFRLHFDVKSIPADEKLKAAELQLTRDALSQQVVASRSS 340
            ||.|:       ...:::....|   ...|.|::..:.|.|.|..:.|..|   |:..  ||.||
Mouse   114 VRLFSPCAQQEQAPSNQVTGPLP---MVDLLFNLDRVTAMEHLLKSVLLYT---LNNS--ASSSS 170

  Fly   341 ANRTRYQVLVYDITRVGVRGQREP-SYLLLDTKTVRLNSTDTVSLDVQPAVDRWLASPQRNYGLL 404
            .......::|.:....|....|.| |:.|   |..|....|..|| :||.|    .|.:|:..|.
Mouse   171 TVTCMCDLVVKEAMSSGRAPPRAPYSFTL---KKHRWIEIDVTSL-LQPLV----TSSERSIHLS 227

  Fly   405 VEVRTVRSLKP-----------APHHHVRLRRSADEAHERWQHKQ----PLLFTYTDDGRHKARS 454
            |.....:...|           .|...:.|..::.:|:..||..|    ||        :|.   
Mouse   228 VNFTCTKDQVPEDGVFSMPLSVPPSLILYLNDTSTQAYHSWQSLQSTWRPL--------QHP--- 281

  Fly   455 IRDVSGGEGGGKGGRNKRQ----PRRPTRRKNH----------------------------DDTC 487
                  |:.|......|.:    .|.|.||:..                            .:.|
Mouse   282 ------GQAGVAARPVKEEAIEVERSPRRRRGQKAIRSEAKGPLLTASFNLSEYFKQFLFPQNEC 340

  Fly   488 RRHSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNPGKVPKAC 552
            ..|...:.||.:.||:|||||..|:..||.|.||..:...:.|..|.:||.::.......||:..
Mouse   341 ELHDFRLSFSQLKWDNWIVAPHRYNPRYCKGDCPRAVRHRYGSPVHTMVQNIIYEKLDPSVPRPS 405

  Fly   553 CVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGCR 588
            |||.:...:::|.:....::..|.|::|....|.||
Mouse   406 CVPGKYSPLSVLTIEPDGSIAYKEYEDMIATRCTCR 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 54/241 (22%)
TGFB 487..588 CDD:214556 31/100 (31%)
Gdf9NP_032136.2 TGF_beta_GDF9 336..441 CDD:381673 31/104 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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