DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Gdf3

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_032134.2 Gene:Gdf3 / 14562 MGIID:95686 Length:366 Species:Mus musculus


Alignment Length:400 Identity:104/400 - (26%)
Similarity:169/400 - (42%) Gaps:100/400 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 EKSLLSLFNMKRPPKIDRSKIIIPEPMKKL-----------------YAEIMGHELDSVN-IPKP 273
            :..||....:::.|...|.: .:|..::|:                 |.:.:|...:.:. :|..
Mouse    27 DSDLLQFLGLEKAPSPHRFQ-PVPRVLRKIIRAREAAAASGASQDLCYVKELGVRGNLLQLLPDQ 90

  Fly   274 GLLTKSANTVRSFTHKDSKIDDRFPHHHRFRLHFDVKSIPADEKLKAAELQLTRDALSQQVVASR 338
            |..   .||.:.|  :|.....:.       |:|::.:|  .||.|....|||.|      :..|
Mouse    91 GFF---LNTQKPF--QDGSCLQKV-------LYFNLSAI--KEKAKLTMAQLTLD------LGPR 135

  Fly   339 SSAN-RTRYQVLVYDITRVGVRGQREPSY-LLLDTKTVRLNSTDTVSLDVQPAVDRWLASPQRNY 401
            |..| |....|.:..:...||.|:..|.. .||..::|. .....:..::|.|:..|.::..:|.
Mouse   136 SYYNLRPELVVALSVVQDRGVWGRSHPKVGRLLFLRSVP-GPQGQLQFNLQGALKDWSSNRLKNL 199

  Fly   402 GLLVEVR---------TVRSLKPAPHHHVRLRRSADEAHERWQHKQPLLFTYTDDGRHKARSIRD 457
            .|.:|:.         ||:...|..    ||.||.        |...|:.|......|       
Mouse   200 DLHLEILVKEDRYSRVTVQPENPCD----RLLRSL--------HASLLVVTLNPKHCH------- 245

  Fly   458 VSGGEGGGKGGRNKRQPRRPTRRKNH----------DDTCRRHSLYVDFSDVGWDDWIVAPLGYD 512
                               |:.||..          .:.|.||.|:::|.|:||..|::||.|:.
Mouse   246 -------------------PSSRKRRAAISVPKGFCRNFCHRHQLFINFQDLGWHKWVIAPKGFM 291

  Fly   513 AYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNPGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNY 577
            |.||||:|||.:..:.||:|:|.:|.|::..:| |||||.||||:|..::|||.:....|:|::|
Mouse   292 ANYCHGECPFSMTTYLNSSNYAFMQALMHMADP-KVPKAVCVPTKLSPISMLYQDSDKNVILRHY 355

  Fly   578 QEMTVVGCGC 587
            ::|.|..|||
Mouse   356 EDMVVDECGC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 51/245 (21%)
TGFB 487..588 CDD:214556 47/100 (47%)
Gdf3NP_032134.2 TGFb_propeptide <110..204 CDD:279078 27/102 (26%)
TGFB 266..366 CDD:214556 47/100 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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