DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Gdf1

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001156754.1 Gene:Gdf1 / 14559 MGIID:95683 Length:357 Species:Mus musculus


Alignment Length:437 Identity:103/437 - (23%)
Similarity:160/437 - (36%) Gaps:149/437 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 PSTYSKEALIKDKLKPDPSTLVEIEKSLLSLFNMKRPPKI------------------DRSKIII 249
            |||         .|.|.|:::.. ..:||.:..:...|:.                  |..:..:
Mouse    19 PST---------TLAPAPASMGP-AAALLQVLGLPEAPRSVPTHRPVPPVMWRLFRRRDPQEARV 73

  Fly   250 PEPMKKLYAEIMGHELDSV-NIPKPGLLTKSANTVRSFTHKDSKIDDRFPHHHRFRLHFDVKSIP 313
            ..|::..:.|.:|...:.| :||..||.::.|...|:        ....|   .:.:.||:.::.
Mouse    74 GRPLRPCHVEELGVAGNIVRHIPDSGLSSRPAQPART--------SGLCP---EWTVVFDLSNVE 127

  Fly   314 ADEKLKAAELQLTRDALSQQV------VASRSSANRTRYQVLVYDITRVGVRGQREPSYL----L 368
            ..|:...|.|:|..:|.|:..      ||..:.|.....::|         |....|..|    |
Mouse   128 PTERPTRARLELRLEAESEDTGGWELSVALWADAEHPGPELL---------RVPAPPGVLLRADL 183

  Fly   369 LDTK---------TVRLNSTDTVSLDVQPAVDRWLASPQRNYGLLVEVRTVRSLKPAPHHHVRLR 424
            |.|.         ||||      :|.:.|...  .|..:.....|:.|.....|.|.|    |||
Mouse   184 LGTAVAANASVPCTVRL------ALSLHPGAT--AACGRLAEASLLLVTLDPRLCPLP----RLR 236

  Fly   425 RSADEAHERWQHKQPLLFTYTDDGRHKARSIRDVSGGEGGGKGGRNKRQPRRPTRRKNHDDTCRR 489
            |          |.:|.:                    |.|..|                  |||.
Mouse   237 R----------HTEPRV--------------------EVGPVG------------------TCRT 253

  Fly   490 HSLYVDFSDVGWDDWIVAPLGYDAYYCHGKCPFPLADHFNST----------NHAVVQTLVNNMN 544
            ..|:|.|.:|||..|::||.|:.|.:|.|.|..|      .|          ||||::.|::...
Mouse   254 RRLHVSFREVGWHRWVIAPRGFLANFCQGTCALP------ETLRGPGGPPALNHAVLRALMHAAA 312

  Fly   545 PGKVPKA---CCVPTQLDSVAMLYLNDQSTVVLKNYQEMTVVGCGCR 588
            |  .|.|   ||||.:|..:::|:.::...|||::|::|.|..||||
Mouse   313 P--TPGAGSPCCVPERLSPISVLFFDNSDNVVLRHYEDMVVDECGCR 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 51/256 (20%)
TGFB 487..588 CDD:214556 40/113 (35%)
Gdf1NP_001156754.1 TGFb_propeptide 36..>141 CDD:279078 21/115 (18%)
TGFB 251..357 CDD:214556 40/113 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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