DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and Lefty1

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_034224.1 Gene:Lefty1 / 13590 MGIID:107405 Length:368 Species:Mus musculus


Alignment Length:389 Identity:85/389 - (21%)
Similarity:148/389 - (38%) Gaps:85/389 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 EIEKSLLSLFNMKRPPKIDRSKI---IIPEPMKKLYAEIMGHELDSVNIPKPGLLTKSANTVRSF 286
            :|..|||....:.:||.:|::.:   :||..::..|..::.|.            ..|.:..:.|
Mouse    26 QILGSLLQQLQLDQPPVLDKADVEGMVIPSHVRTQYVALLQHS------------HASRSRGKRF 78

  Fly   287 THKDSKIDDRF------PHHHRFRLHFDVKSIPADEKLKAAELQL-----TRDALSQQVVASRSS 340
            :....::..||      .|...|.:.   :.:|.:.:|..|.|:|     .|.||.:|   .|.|
Mouse    79 SQNLREVAGRFLVSETSTHLLVFGME---QRLPPNSELVQAVLRLFQEPVPRTALRRQ---KRLS 137

  Fly   341 ANRTRYQVLVYDITRVGVRGQREPSYLLLDTKTVRLNSTDTVSLDVQPAVDRWLASPQRNYGLLV 405
            .:..|.:|.: :..|....|....:  |:|::.|.::.:...:.||..||:.|....:....||:
Mouse   138 PHSARARVTI-EWLRFRDDGSNRTA--LIDSRLVSIHESGWKAFDVTEAVNFWQQLSRPRQPLLL 199

  Fly   406 EVRTVRS-LKPAP-HHHVRLRRSADEAHERWQHKQPLLFTYTDDGRHKARSIRDVSGGEGGGKGG 468
            :|...|. |.|.. ..|..:|.:|....:.....:|.|..:|.|       ::|.        |.
Mouse   200 QVSVQREHLGPGTWSSHKLVRFAAQGTPDGKGQGEPQLELHTLD-------LKDY--------GA 249

  Fly   469 RNKRQPRRPTRRKNHDDTCRRHSLYVDFSDVGW-DDWIVAPLGYDAYYCHGKC---PFPLADHFN 529
            :....|..|.   .....|.|..:|:|...:.| ::||:.|.|:..|.|.|.|   |..|...: 
Mouse   250 QGNCDPEAPV---TEGTRCCRQEMYLDLQGMKWAENWILEPPGFLTYECVGSCLQLPESLTSRW- 310

  Fly   530 STNHAVVQTLVNNMNPGKVPKACCVPTQLDSVAMLYLNDQ------STVVLKNYQEMTVVGCGC 587
                           |...|:. ||.:::.|:.|:....:      ..|.|.|   |.|..|.|
Mouse   311 ---------------PFLGPRQ-CVASEMTSLPMIVSVKEGGRTRPQVVSLPN---MRVQTCSC 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 51/234 (22%)
TGFB 487..588 CDD:214556 28/111 (25%)
Lefty1NP_034224.1 TGFb_propeptide <106..211 CDD:279078 28/110 (25%)
TGF_beta 263..355 CDD:278448 27/111 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.