DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpp and gdf5

DIOPT Version :9

Sequence 1:NP_477311.1 Gene:dpp / 33432 FlyBaseID:FBgn0000490 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001128589.1 Gene:gdf5 / 100189547 XenbaseID:XB-GENE-481784 Length:496 Species:Xenopus tropicalis


Alignment Length:537 Identity:156/537 - (29%)
Similarity:234/537 - (43%) Gaps:88/537 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 PASFSDSDKSH-RSKTNKKPSKSDANRQFNEVHKPRTDQLENSKNKSKQLVNKPNHNKMAVKEQR 140
            |.....|::|| .:|.....:.........:|:..||..|.:.....|.....|.........:.
 Frog    23 PLVLGHSEQSHPGTKVGIAGTGGKERNPLPKVNATRTGILGHGVGLQKGRSKVPLVQSRIFLSKN 87

  Fly   141 SHHKKSHHHRSHQPKQASASTESHQSSSIESIFVEEPTLVLDREVASINVPANAKAIIAEQGPST 205
            ...||....|:: |...:.:.|:.||.  |.|....|..|..:        |:.|.|      :.
 Frog    88 EDIKKQAASRAN-PHVKTGNAENRQSG--EKIETPRPPHVTSK--------ASTKLI------NI 135

  Fly   206 YSKEALIKDKLKPDPSTLVEIEKSLLSLFNMKRPPKIDRSKIIIP-EPMKKLYAEIMGHELDSVN 269
            ::..|..|.|..|:|.|    ||.....|  |.|       :|.| |.|..||..:...|...:|
 Frog   136 HADSAGFKPKRPPNPLT----EKEQKDAF--KHP-------LITPHEYMLSLYRTLSDVERKGIN 187

  Fly   270 IP---KPGLLTKSANTVRSFTHKDSKIDDRFPHHHRFRLHFDVKSIPADEKLKAAELQLTRDALS 331
            ..   :.||    |||:.||..|..  |:|.....|.:..||:.::..| .|..|||::.|   .
 Frog   188 GSLKLEAGL----ANTITSFIDKGQ--DERMAAARRQKYTFDISALEKD-GLLGAELRILR---K 242

  Fly   332 QQVVASRSSANRTRYQVLVYDITRVGVRGQREPSYLLLDTKTVRLNSTDTVSLDVQPAVDRW--L 394
            :.:.|..:||.:. :|:.:|...      ..:.|..|||::.  |.|.||...:|   .|.|  .
 Frog   243 RPIDAKLNSAGKL-WQIKLYSCP------ANKKSATLLDSRP--LGSIDTPKWEV---FDIWKLY 295

  Fly   395 ASPQRNYGLLVEVRTVRSLKPAPHHHVRLRRSADEAHERWQHKQPLLFTYTDDGRHKARSIRDVS 459
            .:.:.:..|..|:..:...|||....|...|:..:.:|:     .:...:   ||.|.   ||:.
 Frog   296 KNFKNSVQLCFELEVLDKGKPADLRSVGFNRTGRQTNEK-----AIFLVF---GRTKK---RDLF 349

  Fly   460 GGEGGGKGGR----------NKRQPRR---PTRR-----KNHDDTCRRHSLYVDFSDVGWDDWIV 506
            ..|...:.|:          |:|:.||   .||:     ||....|.:..|:|:|.|:||||||:
 Frog   350 FNEIKARSGQDDKTVYEYLFNQRRKRRAPLSTRQGKRPNKNSKARCSKKPLHVNFKDMGWDDWII 414

  Fly   507 APLGYDAYYCHGKCPFPLADHFNSTNHAVVQTLVNNMNPGKVPKACCVPTQLDSVAMLYLNDQST 571
            |||.|:||:|.|.|.|||..|...|||||:|||:|:|:|...|..|||||:|..:::||.:..:.
 Frog   415 APLEYEAYHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPETTPPTCCVPTRLSPISILYTDSANN 479

  Fly   572 VVLKNYQEMTVVGCGCR 588
            ||.|.|::|.|..||||
 Frog   480 VVYKQYEDMVVESCGCR 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dppNP_477311.1 TGFb_propeptide 225..444 CDD:279078 56/224 (25%)
TGFB 487..588 CDD:214556 52/100 (52%)
gdf5NP_001128589.1 TGFb_propeptide 142..328 CDD:279078 60/220 (27%)
TGFB 395..496 CDD:214556 52/100 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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