DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGlut and si:ch1073-513e17.1

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_005159826.1 Gene:si:ch1073-513e17.1 / 571066 ZFINID:ZDB-GENE-030131-7188 Length:508 Species:Danio rerio


Alignment Length:507 Identity:167/507 - (32%)
Similarity:253/507 - (49%) Gaps:57/507 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 DDDDDRPDSP---ASFEEIERPPLRKIDKYCKAECPCMPARYTIATMACVGFMIAFGMRCNMSAA 119
            :||.|...:|   ...:||:.||     |.|...|       .:|.|...||.:.:|:|.|:|.|
Zfish    13 EDDQDSDTAPLLEKEVQEIKVPP-----KCCSVRC-------NLAVMMFFGFAVVYGLRVNLSVA 65

  Fly   120 ----------------KLKGE-------HN----------GTVFMNWTVAVESHVDSSFFWGYLV 151
                            .:..|       ||          |.....|....:..:..:||:|||.
Zfish    66 MVAMVNGTNDQPSSNSSISNECPAPSPAHNNNSQSSEQPEGIPRYPWNSETQGMLLGAFFFGYLF 130

  Fly   152 TQIPGGFIASKFPANKIFGLSIVSSATLHLFVPFAMTLMHGHVVICVRVLQGLFEGVTYPACHGI 216
            ||||||:::.:|..:...|..::.:|.|.|..|.:..| ....:..:|.|:|..||||:||...:
Zfish   131 TQIPGGYLSGRFGGSLFLGGGVLGTALLTLLTPLSAQL-GAKWLFALRALEGFGEGVTFPAMMAM 194

  Fly   217 WRFWAPPMERSRLATLAFSGSYAGVVVGLPLSGLLADAVGYQAPFYAYGVFGIIWYMFWIWLCFE 281
            |..||||:||:||.|.:.:||..|..|.|||:|.:..::|:.|.||:.|..|.:|.:||..|..:
Zfish   195 WARWAPPLERARLMTFSGAGSSFGAFVALPLTGFICHSLGWPAVFYSCGGAGCLWAVFWFILVSD 259

  Fly   282 NPRKHPAISIPELKYIEKSLGE--SAHPTMPSLKTTPWREMMRSMPVYAIIVANFCRSWNFYLLV 344
            .||.||.|::.|..||..|||:  :||..     :.|...|:.|||::|||:...|.:|::|.|:
Zfish   260 EPRTHPRITVQEKDYIINSLGQQGTAHGW-----SVPVWSMLFSMPLWAIIIPQMCSNWSYYTLL 319

  Fly   345 LFQSSFLKHKFGFKVEEAGFVGSLPHLIMTTIVPFGGMLADHLRKNGILSTTNVRKLFNCGGFGM 409
            .....::.....|.:.:..|:.:||:|.........|:|||:|.:..|||.|.|||:|...|..:
Zfish   320 TSLPIYMDTVLHFDLRQNSFLSALPYLAGWLFSVGSGVLADNLLEKEILSVTAVRKIFTFIGLFL 384

  Fly   410 EGLFFLFVAHSS-TATGAMFALTCGVAFSGFAISGYNVNHLDIAPRYASILMGLSNGIGTLAGII 473
            ...|.|.|..|. :...|:..||...||.||:.:|..:|.:|||||||.:|:|::|..||:.|::
Zfish   385 PAAFLLAVGFSGCSGVLAVTFLTLSSAFGGFSAAGVFINQIDIAPRYAGMLLGITNTFGTIPGVL 449

  Fly   474 VPYALDGLIQANPTGCWTTVFTLAACVHLVGCTFYGIFASGELQPWAEPPAE 525
            .|..:....:.:....|..||.|:|.|...|..||.||.:|::|.||....|
Zfish   450 APIVVGYFTKNHSVSGWRNVFWLSAGVSAFGAIFYVIFGTGKIQSWARTDEE 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 150/449 (33%)
MFS_1 101..475 CDD:284993 138/409 (34%)
si:ch1073-513e17.1XP_005159826.1 2A0114euk 32..500 CDD:129972 160/485 (33%)
MFS 112..487 CDD:119392 136/380 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582633
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53923
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X201
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.850

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