DRSC/TRiP Functional Genomics Resources

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Protein Alignment VGlut and F56A4.12

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001303741.1 Gene:F56A4.12 / 186355 WormBaseID:WBGene00018920 Length:465 Species:Caenorhabditis elegans


Alignment Length:450 Identity:100/450 - (22%)
Similarity:178/450 - (39%) Gaps:89/450 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IATMACVGFMIAFGMRCNMSAAKLKG---EHNGTVFMNWTVA--VESHVDSSFFW-----GYLVT 152
            :.|:||:.|:....:..|.:...::.   ::|  :..|:|..  .|.:.:.|..:     |.|:.
 Worm    34 VLTLACLTFIQMNTLTFNFTVICMEDIVEDYN--LLTNYTDTHWFERNTEKSLLFSGAAIGGLIG 96

  Fly   153 QIPGGFIASKFPANKIFGLSIVSSATLHLFVPFAMTLMHGHVVICVRVLQGLFEGVTYPACHGIW 217
            .||...:.|......:..:|.:.||......|.|:::.....::| |:|||:...:.:.....:.
 Worm    97 LIPAVPLISSLGLGNVQTISGIISAFGAFLFPLAVSIGFYTSLLC-RILQGVGSAIMFTTVGVVP 160

  Fly   218 RFWAPPMERSRLATLAFSGSYAGVVVGLPLSGLLAD-AVGYQAPFYAY-GVFGIIWYMFWIWLCF 280
            ..|||..|.:....:.........::.:|:||||.: |:|:::.:|.: |:..||:.:|| :...
 Worm   161 GVWAPSNEANTFMAILSCALQLSNIICMPVSGLLCESALGWRSIYYLFGGLTFIIYIVFW-FTYS 224

  Fly   281 ENPRKHPAISIPELKYIEKSLGESAHPTMPSLK--TTPWREMMRSMPVYAIIVANFCRSWN--FY 341
            ::|:.|..:|..||..|.....|.....:|.|.  |.|          ..:|....|...|  |:
 Worm   225 DDPKLHRNVSQKELGKISTGKIEKIKEPVPYLAICTDP----------TVLITWTSCFGGNMAFF 279

  Fly   342 LLVLFQSSFLKHKFGFKVEEAGFVGSLPHLIMTTIVPFG-GMLADHLRKNGILSTTNVRKLFNCG 405
            .|.|:..::|:....|.|.|.||:.:|| .|::.||.|| |.|:|.:.                 
 Worm   280 ALSLYGPTYLREILKFDVRETGFLSALP-FILSAIVKFGAGQLSDRMT----------------- 326

  Fly   406 GFGMEGLFFLFVAHSSTATGAMFALTCGVAFS-GFAISGYNVNHL--DIAPRYASILMGLSNGIG 467
                    ||    |..|....||.|..:.|: |..:..:..:.|  .||..:|.:..|| |.:|
 Worm   327 --------FL----SEKARFVFFAATSQIGFAVGLVVMAFTSDRLIAQIAFNFAIVSSGL-NIMG 378

  Fly   468 TLAGI------------------------IVPYALDGLIQANPTGCWTTVFTLAACVHLV 503
            .:..|                        :.|..:..:...|....||.:|.....|.:|
 Worm   379 VIKCIQLRCRQHVHFAIAVISFTAYVVQFLAPIIVSIICPDNTPEQWTILFLFITGVIIV 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 99/449 (22%)
MFS_1 101..475 CDD:284993 92/417 (22%)
F56A4.12NP_001303741.1 MFS 81..443 CDD:391944 90/400 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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