DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGlut and F56A4.10

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001303739.1 Gene:F56A4.10 / 186353 WormBaseID:WBGene00018918 Length:470 Species:Caenorhabditis elegans


Alignment Length:567 Identity:119/567 - (20%)
Similarity:205/567 - (36%) Gaps:180/567 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IATMACVGFMIAFGMRCNMSAAKLKGEHNGTVFMNWTV---------------AVESH------V 141
            :.|:.|:.||                 ...|:.:|:||               :.|:|      .
 Worm    40 VLTLICLTFM-----------------QMNTLTLNFTVICMDDIVEDFHMFHNSTETHWFERSTE 87

  Fly   142 DSSFFWGYLVTQIPGGFIASKFPANKIFGLSIVSSATLHLFV--------PFAMTLMHGHVVICV 198
            .|..|.|..:    ||.|.......:|..:.:.::.|:..|:        |.|:::......:| 
 Worm    88 KSLLFSGVAI----GGLIGLVPSVPQISSIGLRNTQTISGFISGLGSFLFPLAVSVGFYTSFLC- 147

  Fly   199 RVLQGLFEGVTYPACHGIWRFWAPPMERSRLATLAFSGSYAGVVVGLPLSGLLAD-AVGYQAPFY 262
            |||||:...|.:.|...:...|||..|.:...::.........|:.:|:||||.: |||:::.:|
 Worm   148 RVLQGIGAAVLFTAVGVVPGVWAPKSEANTFMSILACAFQLSNVICMPVSGLLCESAVGWRSIYY 212

  Fly   263 AYGVFGIIWY-MFWIWLCFENPRKHPAISIPELKYIEKSLGESAHPTMP--SLKTTP-----WRE 319
            ..|....:.| :|| :...::|:.|..:|..||:.|.....|.....:|  ::.|.|     |  
 Worm   213 ISGAITFVLYTVFW-FTYTDDPKLHRNVSQKELRKISTGKVEKIKEPVPYFAVSTDPTVIISW-- 274

  Fly   320 MMRSMPVYAIIVANFCRSWNFYLLVLFQSSFLKHKFGFKVEEAGFVGSLPHLIMTTIVPF-GGML 383
                       ::.|..:..||:|.::..::|:....|.|:|.||:.:|| .|::.|..| .|.:
 Worm   275 -----------ISLFGGNMGFYVLCIYGPTYLREVLKFDVKETGFLTALP-FILSAIAKFSAGRI 327

  Fly   384 ADHLRKNGILSTTNVRKLFNCGGFGMEGLFFLFVAHSSTATGAMFALTCGVAFSGFAISGYNVNH 448
            :|.|  .|:                .|...|:|.|       ::|.:  |:. :|..:..:..|.
 Worm   328 SDKL--TGL----------------SERARFVFFA-------SIFQI--GLV-AGLVVMAFTTNR 364

  Fly   449 L--DIAPRYASILMGLSNGIGTLAGIIVPYALDGLIQANPTGCWTTVFTLAACVHLVGCTFYGIF 511
            :  .||..:|.:..||:     :.|::....|..|...:.|   .||.:..|            :
 Worm   365 VIAQIAFNFAIVSSGLN-----IMGVVKCVQLRCLQHVHYT---LTVMSFTA------------Y 409

  Fly   512 ASGELQPWAEPPAEEQKVWAPPPGAITNTDPSQAGMLGDYMKETSFGAPEYTEQSQMQQSTAISY 576
            ||..|.|..                                  .|...|.||.:........|| 
 Worm   410 ASQFLSPTL----------------------------------VSIICPNYTNEQWKTFFLVIS- 439

  Fly   577 GATGHVANNPFAMASGAPPIAEEDAPPTYGDVTNPGQYGYTQGQMPS 623
               |.:.    |..:|.|.:|..||.            |||:.|.|:
 Worm   440 ---GLIV----ACNAGFPFLARSDAA------------GYTKKQEPT 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 97/454 (21%)
MFS_1 101..475 CDD:284993 90/414 (22%)
F56A4.10NP_001303739.1 MFS 52..453 CDD:391944 107/510 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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