DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGlut and slc-17.3

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_498709.2 Gene:slc-17.3 / 182107 WormBaseID:WBGene00015333 Length:535 Species:Caenorhabditis elegans


Alignment Length:410 Identity:97/410 - (23%)
Similarity:172/410 - (41%) Gaps:27/410 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 WTVAVESHVDSSFFWGYLVTQIPGGFIASKFPANKIFGLSIVSSATLHLFVPFAMTLMHGHVVIC 197
            |....::.:.|..|||.|:|.:|..|...:|....:..:|:.....:.:..||..|......|..
 Worm   100 WNSYEQNLIFSGTFWGSLITVLPSMFFIERFSPRHVLQISVALYILVTVITPFLATHFGYFSVFL 164

  Fly   198 VRVLQGLFEGVTYPACHGIWRFWAPPMERSRLATLAFSGSYAGVVVGLPL-SGLLADAVGYQAPF 261
            .|:..||.||..:|..:.|...|.|..|:|...::...|:......|.|: :.:.|..:|:.|.|
 Worm   165 ARIGMGLGEGFVFPTNNAIIGNWFPSSEKSTALSIFTLGNQIASAAGSPMVAAVCASDLGWPATF 229

  Fly   262 YAYGVFGIIWYMFWIWLCFENPRKHPAISIPELKYIEKSLGESAHPTMPSLKTTPWREMMRSMPV 326
            |..|:|...|.:.|.:....:|.|...::..|.:|:..::.:..|.:          |..||:|.
 Worm   230 YFAGIFATGWSILWFFTASSHPAKVKMMTKKEKEYLLANVVKKVHKS----------EKTRSIPY 284

  Fly   327 YAIIVANF------CRSWNFYLLVLFQ---SSFLKHKFGFKVEEAGFVGSLPHLIMTTIVPFGGM 382
            ..|:.:..      |..:....:.|||   .|:.|......|...|...::|::.........|:
 Worm   285 SKILTSPAFLGQLQCHFFVNLFMTLFQIYLPSYFKEVLHLGVIANGTFTAIPNIFNMIFKVVWGI 349

  Fly   383 LADHLRKNGILSTTNVRKL-FNCGGFGMEG---LFFLFVAHSSTATGAMFALTCGVAFS-GFAIS 442
            ..|.|::|.|||.|...|: .....||...   |...||..|:..||.:|  .|.:..| |..:|
 Worm   350 GIDKLKENKILSNTKAVKVSHGVASFGSSFSLILLAFFVDCSNPTTGLIF--FCLMYSSMGTFVS 412

  Fly   443 GYNVNHLDIAPRYASILMGLSNGIGTLAGIIVPYALDGLIQANPTGCWTTVFTLAACVHLVGCTF 507
            |:..:.|.:||:|.:.:..:|..:..:..:..|..:....:......|..:|...:..|:...:.
 Worm   413 GFYTSLLSLAPQYTATMSAISMFVAMIGRLTTPAVMSMFRKDGTAAEWQNIFIGCSLAHIFSGSI 477

  Fly   508 YGIFASGELQPWAEPPAEEQ 527
            :.:|.|||||.||:...:::
 Worm   478 FLLFGSGELQDWAKVEDDQE 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 89/393 (23%)
MFS_1 101..475 CDD:284993 85/356 (24%)
slc-17.3NP_498709.2 2A0114euk 20..496 CDD:129972 97/407 (24%)
MFS 90..481 CDD:119392 89/392 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.