DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGlut and slc-17.1

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001041300.1 Gene:slc-17.1 / 181777 WormBaseID:WBGene00022647 Length:479 Species:Caenorhabditis elegans


Alignment Length:438 Identity:156/438 - (35%)
Similarity:233/438 - (53%) Gaps:19/438 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 RYTIATMACVGFMIAFGMRCNMSAAKL------KGEHNGTV------FMNWTVAVESHVDSSFFW 147
            |:.:|.:|.:||...:.||.|:|.|.:      :.:.|||.      |.|||...:..|.||||:
 Worm    38 RHVVAILALLGFANIYAMRANLSIAIVEMTSGTERKVNGTTLHVLGDFENWTPMTQGVVLSSFFY 102

  Fly   148 GYLVTQIPGGFIASKFPANKIFGLSIVSSATLHLFVPFAMTLMHGHVVICVRVLQGLFEGVTYPA 212
            ||:|:|:|||::|....|..||......:|...|..|....:.:| :::..|.::||.|||||||
 Worm   103 GYIVSQLPGGYLAYTHGAKTIFFAGTFGTAVFTLLTPPFARMGYG-MLVFARFMEGLLEGVTYPA 166

  Fly   213 CHGIWRFWAPPMERSRLATLAFSGSYAGVVVGLPLSGLLADAVGYQAPFYAYGVFGIIWYMFWIW 277
            .|.||..||||||:::|||.||||||.|.||.:|||..|.:..|:...|:.:|..|:||.|.|..
 Worm   167 MHVIWSRWAPPMEQTKLATFAFSGSYFGTVVAMPLSAYLGEHFGWPMIFWFFGALGVIWCMVWYK 231

  Fly   278 LCFENPRKHPAISIPELKYIEKSLGESAHPTMPSLKTTPWREMMRSMPVYAIIVANFCRSWNFYL 342
            ...:.|...|.||..||..:::......|      ...||.:::||.||:|:|||:..::..||:
 Worm   232 TVHDRPEDDPKISTSELALLQRDAVSQNH------YIVPWAQILRSKPVWAVIVAHSAQNLGFYI 290

  Fly   343 LVLFQSSFLKHKFGFKVEEAGFVGSLPHLIMTTIVPFGGMLADHLRKNGILSTTNVRKLFNCGGF 407
            ::......||...|:.||:||...|||:.:|...:..||.|.|:||::....|..|||:....||
 Worm   291 MLTNLPKMLKDIAGYNVEKAGIASSLPYFLMGFQIITGGQLCDYLRRDKHYDTLFVRKMACALGF 355

  Fly   408 GMEGLFFLFVAHSSTATGAMFALTCGVAFSGFAISGYNVNHLDIAPRYASILMGLSNGIGTLAGI 472
            ..:.:|...|..:|.:...:...:..:...|....|::|||||:||:||..||..||...|:.||
 Worm   356 IGQSVFLFLVMTTSNSLLLVLFFSISIGLGGICWCGFSVNHLDLAPQYAGHLMATSNTFATIPGI 420

  Fly   473 IVPYALDGLIQANPTGCWTTVFTLAACVHLVGCTFYGIFASGELQPWA 520
            ..|..:..::|....|.|..:..:....:|:|...:..||...|||||
 Worm   421 FGPLLVGAIVQNGTIGEWNVIMYIIISAYLLGAAIFWKFADATLQPWA 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 148/425 (35%)
MFS_1 101..475 CDD:284993 141/385 (37%)
slc-17.1NP_001041300.1 MFS_SLC17 42..460 CDD:340876 148/424 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D144672at33208
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100421
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X201
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

Return to query results.
Submit another query.