DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VGlut and T01H3.3

DIOPT Version :9

Sequence 1:NP_001245848.1 Gene:VGlut / 33427 FlyBaseID:FBgn0031424 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_495657.2 Gene:T01H3.3 / 174270 WormBaseID:WBGene00011349 Length:616 Species:Caenorhabditis elegans


Alignment Length:566 Identity:115/566 - (20%)
Similarity:194/566 - (34%) Gaps:99/566 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SYHG-GHGGYEEMEGGDREGRGPGGGHAYD---DDDDRP-----DSPASFEEIERPPLRKIDKYC 85
            |.|| .:.||..::....|.|.|.....:|   :|:..|     :.||.....|.|..|:.:|..
 Worm    59 SLHGSSYKGYNRLKRELSESRIPSKVVRFDESTEDEGHPILPPTEKPAPVITTETPTTRETEKPV 123

  Fly    86 KAECPCMPARYTIATMACVGFMI-------AFGMRCNMSAAKLKGEHNG-------TVFMNWTVA 136
            .......|...|:..:......:       ........:..||:...:|       .:|.|.:..
 Worm   124 PIFITNRPETTTVRAVRTTTKKVETTTSDDVVAREVERTLKKLRDAEDGKSESIPEQLFENVSNE 188

  Fly   137 VESHVDSSFFWGYLVTQ-----IPGGFIA----SKFPANKIFGLSIVSSATLHLFVPFAMTLMHG 192
            ....:......|.|...     |.|.|:.    .||...|:|.:.:|.|..|.|.  |.......
 Worm   189 PTETLPLRLQRGLLFAASGLGVIFGSFVTINLIKKFGVRKVFSICMVQSTILILL--FLYVQKRS 251

  Fly   193 HV-VICVRVLQGLFEGVTYPACHGIWRFWAPPMERSRLATLAFSGSYAGVVVGLPLSGLL-ADAV 255
            :: ::..|.|.|......:|....:...|.|..|:....|..|.....|.||..|::... |..:
 Worm   252 YIFLLLTRFLLGFSFSSVFPVMGNLLIQWGPLKEQLIFITSMFMFLSIGPVVSWPIAHYFHALEI 316

  Fly   256 GYQAPFYAYGVFGIIWYMFWIWLCF--ENPRKHPAISIPELKYI----------EKSLGESAHPT 308
            ...:.:|..  .|.:.::..||..|  :.|:.||.:|..||..|          .::|.::    
 Worm   317 SLDSVYYIQ--CGTLAFLTLIWSIFYRDRPQDHPWVSGVELNKIVAGKVNELRSNRALADA---- 375

  Fly   309 MPSLKTTPWREMMRSMPVYAIIVANFCRSWNFYLLVLFQSSFLKHKFG----FKVEEAGFVGSLP 369
                    :..:.||:..::|..:.|    ..:.:..|.|.:|.....    |.||..|...|.|
 Worm   376 --------YTSLFRSLSAWSIWTSAF----GLFSVTAFFSIYLPSLLASPDVFVVEGLGIHSSFP 428

  Fly   370 -HLIMTTIVPFGGMLADHLRKNGIL--STTNVRKLFNCGGFGMEGLFFL---FVAHSSTATGAMF 428
             .|:..:.:.|..:        .:|  .:|.:.::.|...|.:..:..:   .||...|..|...
 Worm   429 FQLLPLSCIIFSSL--------NVLFKPSTKIVRILNFTAFAIGAILMIAIVLVASLQTKAGLFS 485

  Fly   429 ALTCGVAFSGFAISGYNVNHLDIAPR-YASILMGLSNGIGTLAGIIVPYALDGLIQANPTGCWTT 492
            .|...:...|.||....|..|.:..| :|..::.:......||..|:|..:...:..|....|..
 Worm   486 LLLISMLPFGLAIVAGFVRSLTVVGRVFAEQIVAMCAVPFGLAFSILPMVVTYSVTENKLAEWMK 550

  Fly   493 V-----FTLAACVHLVGCTFYGIFASGELQPWA----EPPAEEQKV 529
            |     |.|:|    |...| .:|..|:...||    :|.|...|:
 Worm   551 VTMFLFFVLSA----VAIEF-AVFGRGKSASWAASSWDPLAASTKM 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VGlutNP_001245848.1 MFS 98..512 CDD:119392 89/466 (19%)
MFS_1 101..475 CDD:284993 80/421 (19%)
T01H3.3NP_495657.2 MFS 200..564 CDD:119392 83/395 (21%)
MFS_1 200..508 CDD:284993 70/335 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.