DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Axud1 and csrnp3

DIOPT Version :9

Sequence 1:NP_001259928.1 Gene:Axud1 / 33419 FlyBaseID:FBgn0261647 Length:852 Species:Drosophila melanogaster
Sequence 2:XP_002667402.3 Gene:csrnp3 / 100332048 ZFINID:ZDB-GENE-120313-2 Length:622 Species:Danio rerio


Alignment Length:563 Identity:175/563 - (31%)
Similarity:234/563 - (41%) Gaps:161/563 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 SALLKDQAEKEAEPEIQKKVETKPIRSNLKRRLEDSES-DAIDLV-PDMS------APPVAPQ-- 297
            |.:||.:.|     |::.......:|.:.:..:..:|| |:.|.| |..|      |...:.|  
Zfish     2 SGILKRKFE-----EVEGASPCSSLRESEEEEISSTESGDSSDSVNPSASHFTHSTATAASAQTH 61

  Fly   298 ----------KRTK----RSINFDEVKVFYFPRQQGFSCVPTAGGCTLGMGARHVGFKTMTLAEH 348
                      ||.|    |.::|::|.|:||.|:|||:.||:.||.||||..||...:..||.|.
Zfish    62 TLQRTASSILKREKRMRTRRVHFEKVTVYYFSRRQGFTSVPSQGGSTLGMSNRHSCIRQYTLGEF 126

  Fly   349 AAELRRAHRSQNQE-----------LQPRGSSSDDSEESEEDYLSEGSGSD-----AEDGSNGFL 397
            |.|..|.||...::           |:...:.|.:|||:....|.:.|..|     .|.....||
Zfish   127 AMEQERIHRDMLRDHLKEEKLNSIRLRLTKNGSVESEEANALTLDDVSDDDLDIDNTEVDEYFFL 191

  Fly   398 QPVTPKQRRALLKAAGVRKIDASEKSECRDIRNSREVCGCSCREFCDPETCACSQAGIKCQVDRA 462
            ||:|.|:|||||:::||:|||..||.|.|.||.|||.|||.||.|||||||.||.|||||||||.
Zfish   192 QPLTTKKRRALLRSSGVKKIDVEEKHELRAIRVSREDCGCDCRLFCDPETCTCSLAGIKCQVDRM 256

  Fly   463 MFPCGCTREACGNTVGRVEFNPTRVRTHYIHTVMRLDLE-----QRQGSVQGVQGGHLQPQQQ-- 520
            .||||||:|.|.|..||:||||.|||||::||:|:|:||     |..|:|.| .|.|..|...  
Zfish   257 SFPCGCTKEGCSNAAGRIEFNPIRVRTHFLHTIMKLELEKSREQQNSGAVAG-NGFHSDPNGHCS 320

  Fly   521 --QPSQQTIGYSPVGTAGSTSAYFLQ--------------------------------------- 544
              ...|..:.|:...|...|:...||                                       
Zfish   321 PLATGQHALEYAIPDTVPQTTIMHLQSGDDMDEVLEDEEEEEEDEDEEDEEDDEDDEDDDDDEDE 385

  Fly   545 ----------------TQS-------------------NYSSGYASPAYTPESSVSYYQQQVQQP 574
                            |||                   .:.:|.|:....|..||..|.:..   
Zfish   386 DEKDDSSSLCSLSDSSTQSLANSDSEEEDDDEDEDKVKEFETGLANSEVAPPPSVMRYSENT--- 447

  Fly   575 GVPTAGQLIPQQQQAQSQSY-----AGYAQLDSLDSG-LFASGSNATPSYGEL--YQS------- 624
                    |....|....||     |.|..::::... |.||..::.|..|:.  ||.       
Zfish   448 --------ITSDNQTNGNSYFINSTAEYYSMENVTPPVLLASNQSSEPYIGDTASYQDRVNDSNR 504

  Fly   625 -LSYGSTQITSYTAAYQQHSASPAVAVAPGAPSSCAYSSCAVP 666
             :|.|...:|:  ..|..:|..|.   .|.|....|...|..|
Zfish   505 VMSQGPFNVTA--DQYADYSQQPE---QPYANHHLAVIGCCTP 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Axud1NP_001259928.1 CSRNP_N 301..500 CDD:292638 110/218 (50%)
PHA03255 643..>786 CDD:165513 7/24 (29%)
csrnp3XP_002667402.3 CSRNP_N 80..294 CDD:292638 109/213 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596570
Domainoid 1 1.000 217 1.000 Domainoid score I2611
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001585
OrthoInspector 1 1.000 - - otm25190
orthoMCL 1 0.900 - - OOG6_108991
Panther 1 1.100 - - O PTHR13580
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1316
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.930

Return to query results.
Submit another query.