DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab5 and rab5c

DIOPT Version :9

Sequence 1:NP_001259925.1 Gene:Rab5 / 33418 FlyBaseID:FBgn0014010 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001025499.1 Gene:rab5c / 594914 XenbaseID:XB-GENE-494292 Length:216 Species:Xenopus tropicalis


Alignment Length:210 Identity:158/210 - (75%)
Similarity:177/210 - (84%) Gaps:5/210 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GTAQRPNG-TSQNKSCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTICIEDTV 77
            ||..|||| .:.||.|||||||||||||||||||||||||||||||||||||||||||:|::||.
 Frog     5 GTTARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCLDDTT 69

  Fly    78 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGN 142
            ||||||||||||||||||||||||||||||||||.|.::|.|||.|||||.:||||||||||:||
 Frog    70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTETFARAKNWVKELQRQASPNIVIALSGN 134

  Fly   143 KADLSNIRVVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDGANNQGTSIRPTG 207
            |||||:.|.|:|.||:.||::|.||||||||||.||||:||:|||||||||:..|.||.:.|..|
 Frog   135 KADLSSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAQGNTGRNRG 199

  Fly   208 T---ETNRPT-NNCC 218
            .   |.|.|: :.||
 Frog   200 VDLQENNPPSRSQCC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab5NP_001259925.1 Rab5_related 29..191 CDD:206653 135/161 (84%)
rab5cNP_001025499.1 Rab5_related 21..183 CDD:206653 135/161 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 275 1.000 Domainoid score I1722
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55533
Inparanoid 1 1.050 309 1.000 Inparanoid score I2563
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 1 1.000 - - FOG0000845
OrthoInspector 1 1.000 - - otm48913
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2000
SonicParanoid 1 1.000 - - X457
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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