DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab5 and rab24

DIOPT Version :9

Sequence 1:NP_001259925.1 Gene:Rab5 / 33418 FlyBaseID:FBgn0014010 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001025141.1 Gene:rab24 / 574423 ZFINID:ZDB-GENE-050706-110 Length:202 Species:Danio rerio


Alignment Length:202 Identity:77/202 - (38%)
Similarity:121/202 - (59%) Gaps:24/202 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHS 93
            |:|:||:.:|||:|||.|:|..:|  ..|| :||||||:.:.:.:.:.|:...||||||.|||.:
Zfish     9 KVVMLGKESVGKTSLVERYVHRRFLVGPYQ-NTIGAAFVAKALNVGEKVITLGIWDTAGSERYEA 72

  Fly    94 LAPMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADL----SNIRVVEF 154
            ::.:|||||:||||.||:.:..||.||:.||||| :....:..|.|.|.|:||    .:.|.|::
Zfish    73 MSRIYYRGARAAIVCYDLTDSSSFGRARFWVKEL-QNCEEHCKIYLCGTKSDLIEADRSTRQVDY 136

  Fly   155 DEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKK--------LPKNDGANNQGTSIRPTGTETN 211
            .:.:.:|:|.|....|||:|||.||:::|..:|:.        :.:..|.:        .|.:.:
Zfish   137 HDVQDFADEIGAQHFETSSKTGKNVDEVFQKVAEDFSSCALEFMQEEKGVD--------LGQKKD 193

  Fly   212 RPTNNCC 218
            ...:|||
Zfish   194 SYFDNCC 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab5NP_001259925.1 Rab5_related 29..191 CDD:206653 72/173 (42%)
rab24NP_001025141.1 Rab24 8..200 CDD:133318 75/200 (38%)
Ras 9..171 CDD:278499 72/163 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0092
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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