DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab5 and rab5ab

DIOPT Version :9

Sequence 1:NP_001259925.1 Gene:Rab5 / 33418 FlyBaseID:FBgn0014010 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_957264.1 Gene:rab5ab / 393945 ZFINID:ZDB-GENE-040122-3 Length:216 Species:Danio rerio


Alignment Length:217 Identity:158/217 - (72%)
Similarity:181/217 - (83%) Gaps:13/217 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SGTGTAQRPNG-TSQNKSCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTICIE 74
            :|.|.|.|||| .:.||.|||||||||||||||||||||||||||||:|||||||||||||:|::
Zfish     2 AGRGGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTLCLD 66

  Fly    75 DTVVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIAL 139
            ||.||||||||||||||||||||||||||||||||||.|::||.|||.|||||.:||||||||||
Zfish    67 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 131

  Fly   140 AGNKADLSNIRVVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKND----GAN--- 197
            |||||||:|.|.::|.:|:.||::|.||||||||||.|||::||:|||||||||:    |||   
Zfish   132 AGNKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVSEIFMAIAKKLPKNEPQPAGANTAR 196

  Fly   198 NQGTSIRPTGTETNRPTNN-CC 218
            |:|..:    |||.:|... ||
Zfish   197 NRGVDL----TETAQPAKGPCC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab5NP_001259925.1 Rab5_related 29..191 CDD:206653 133/161 (83%)
rab5abNP_957264.1 Rab5_related 21..183 CDD:206653 133/161 (83%)
Ras 23..184 CDD:278499 132/160 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 275 1.000 Domainoid score I1717
eggNOG 1 0.900 - - E1_KOG0092
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 304 1.000 Inparanoid score I2632
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 1 1.000 - - FOG0000845
OrthoInspector 1 1.000 - - otm25041
orthoMCL 1 0.900 - - OOG6_100743
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2000
SonicParanoid 1 1.000 - - X457
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.760

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