DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab5 and Rab19

DIOPT Version :9

Sequence 1:NP_001259925.1 Gene:Rab5 / 33418 FlyBaseID:FBgn0014010 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001261575.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster


Alignment Length:195 Identity:80/195 - (41%)
Similarity:114/195 - (58%) Gaps:11/195 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHSL 94
            ||:||:|:...||:.:|.||..|.:.|...:|||..|..:||.:|...:|.:|||||||||:.::
  Fly    22 FKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQERFRTI 86

  Fly    95 APMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADLSNIRVVEFDEAK- 158
            ...|||.|...::||||..:.||...:.|::|:.:..:.|::|.|.|||.||...|.|:|:||: 
  Fly    87 TQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFEEARQ 151

  Fly   159 --QYAEENGLLF-METSAKTGMNVNDIFLAIAKKLPKNDGANNQGTSIRPTGTET---NRPTNNC 217
              ||..|  :|| ||||||..|||.|.|..:|.:|.:...|||  ....|..|.|   .:|..:|
  Fly   152 MCQYIPE--ILFVMETSAKENMNVEDAFRCLANELKRQHDANN--VEEVPENTITLGQGKPLKSC 212

  Fly   218  217
              Fly   213  212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab5NP_001259925.1 Rab5_related 29..191 CDD:206653 71/164 (43%)
Rab19NP_001261575.1 Rab19 19..184 CDD:133267 71/163 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454137
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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