DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec24CD and Sec24b

DIOPT Version :9

Sequence 1:NP_001259918.1 Gene:Sec24CD / 33409 FlyBaseID:FBgn0262126 Length:1231 Species:Drosophila melanogaster
Sequence 2:NP_997092.1 Gene:Sec24b / 99683 MGIID:2139764 Length:1251 Species:Mus musculus


Alignment Length:1338 Identity:378/1338 - (28%)
Similarity:576/1338 - (43%) Gaps:263/1338 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GAPPPNSGG-WPPQ-QQQLPQQQPPQQQLPPQQQQQQPQ-YGAPPPTSAASQPYL--NGNYQQQL 79
            |:|.|.:|. .||: ...:....||||..|.|...|.|. ||.|      .|.|:  :|:|.|  
Mouse     6 GSPHPAAGARMPPKLGGAVSGLAPPQQNGPAQSPMQVPSGYGLP------HQNYMVPSGHYSQ-- 62

  Fly    80 ATSMGGLSVGGGVGGANPLKPPLPQGAPAAAAPPPTGFNQFNSNAAPPPTNNNNAA---FGAPPP 141
                       |.|....|  ||.....:..:.|.|...|   |:..|.:.|...|   :|..| 
Mouse    63 -----------GPGKMTSL--PLDSQCDSYYSRPYTVPTQ---NSGTPSSANQPGAQQMYGRGP- 110

  Fly   142 TQAGSYVNGALPPS--STPQSVASGINQMSLNSATLAGLPHMPPPKAATPG-AAPGQP------P 197
              :..::.|::|.|  ..|.|.:...:..|...::|......|...:|... |:.|.|      |
Mouse   111 --SAPHMGGSMPGSFQGIPASASHSYSSASQPYSSLGNRYSSPTTYSANASVASQGYPSTCSHYP 173

  Fly   198 IPAAGSTSQPPLPGQPPLPGQPPFSGQIPTSQPAPSP-------YGVPSSRPGQPQLPPGATPPT 255
            |....:...|.: ..|.||...|: ||:.|||.||.|       |..||:....|..||  .||:
Mouse   174 ISTVSNVVYPNV-SYPSLPASEPY-GQMFTSQSAPPPARPVKESYSGPSTALTYPSRPP--PPPS 234

  Fly   256 YTQPGLPPQQQQGIPPLQQPG---IPQQQPGFPPQQPGL----------------------PPLS 295
            ..|.....||||........|   :|...|..||.|..|                      ||.|
Mouse   235 QHQQQQQQQQQQQQQQQSHSGYSSLPWSGPALPPAQDSLIRNQMGSLATANSHPTNNENVQPPKS 299

  Fly   296 Q-------PG-----LPPQPGAPYG----AP-----------QQGGY------------------ 315
            .       ||     :||.|..|.|    ||           |.|.|                  
Mouse   300 SSVVSTVLPGPSSTRMPPAPSHPVGPVPSAPPPPEQMQTKGMQYGDYGNNQASSTATPLSSASDD 364

  Fly   316 --------------------------------SGGFP----GQAPGGFPG---APPPLPGQQAAA 341
                                            .|.:|    ..|....|.   .|.|...|..:|
Mouse   365 EEEQEEDEEAGVDSSSTTSSASPLPNSYDALEGGSYPDMHSSSASSPVPDHALEPSPTLAQALSA 429

  Fly   342 PPQFGAPQP---------GYPGQQPGYPPQPGQQPMPGYPPQPGQQLGGPGYPPQPGAGFPGQPG 397
            .|...|.||         |||..||.|     |...|  ||.|.....||.|     .|:|..  
Mouse   430 APTPPAAQPAKVAKPFGYGYPALQPAY-----QNAAP--PPMPAAHPSGPAY-----TGYPQH-- 480

  Fly   398 RPGFNQPPMPGAGNMYQQAPQARRLDPDQMPNPIQVMIENQRLSGGPFVTNQPGLLPPLVTTKFV 462
            .||.||......|...|.:||...|      .|:.:..|...|...|.....|.|...|      
Mouse   481 YPGVNQLSSGLGGLSLQSSPQPESL------RPVNLTQEKNILPPTPIWAPVPNLSAEL------ 533

  Fly   463 VHDQGNSSPRFLRSSLYCIPNTGDLLKTTALPLTLNISPLAKVGEGEMEPPIVNFGEMGPIRCNR 527
              .:.|.||...|.:|..||.|..||....|||.|.:.|...:    .:.|::....:  :||..
Mouse   534 --SKLNCSPDSFRCTLTSIPQTQALLNKAKLPLGLLLHPFRDL----TQLPVITSNTI--VRCRS 590

  Fly   528 CKAYMSPNMQFVDAGRRFQCLMCKVTSEVHQNY-YQHLDHTGQRVDKHERPELLLGTYEFLATKD 591
            |:.|::|.:.|:|. ||::|.:|...::|.:.: |..|  |....:.|:|||:...|.||:|:.|
Mouse   591 CRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEFLYNPL--TRSYGEPHKRPEVQNSTVEFIASSD 652

  Fly   592 YCRNNTPPEVPAFIFIIDVSYNTVKSGLVHLLCSQIKNILKHLPVDQGQDKSKVRVGFITYNSTV 656
            |...  ||:...::|::|||:|.|::|.:.:||..:...|..||.|     |:.|:||:|::||:
Mouse   653 YMLR--PPQPAVYLFVLDVSHNAVEAGYLTVLCQSLLENLDKLPGD-----SRTRIGFMTFDSTI 710

  Fly   657 HFYNIKSSLAQPQMMVVGDVQEMFMPLLDGFLCHPEESAAVIDALMEEIPRMFADTKETETILYP 721
            ||||::..|:||||::|.|:.::|:|..|..|.:..||..:|..|:..:|.||.:|:||.:.|.|
Mouse   711 HFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPSMFINTRETHSALGP 775

  Fly   722 AIQAGLEALKASNAAGKLLVFNSTLPIAEAPGKLKNRDDRKLLGTDKEKTVLTPQTTAYNTLGQE 786
            |:||..:.:  |...|::.||.:.||...| |.|::|:|.....:.|....|.|.|..|..|..:
Mouse   776 ALQAAFKLM--SPTGGRVSVFQTQLPSLGA-GLLQSREDPNQRSSTKVVHHLGPATDFYKKLALD 837

  Fly   787 CVQQGCSVDLFVFNNAYIDLATIGQVSRLTGGEVFKYTYFQA---DVDGKRLIQDIIKNVSRPIA 848
            |..|..:||||:.::.|.|||::..:|:.:.|.:|.|..|.:   ....::|.:|:.:.::|.|.
Mouse   838 CSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIFYYPSFHSTHNPSQAEKLQKDLKRYLTRKIG 902

  Fly   849 FDAVMRVRTSAGIRPTEFYGHFFMSNTTDVELASIDATKSISIEIKHDDKLAPEENVYLQVALLY 913
            |:||||:|.:.|:....|:|:||:.:|..:.||:|:.....::::..::.|.....|..|.||||
Mouse   903 FEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTALVCFQTALLY 967

  Fly   914 TSCSGQRRLRILNLALRVTTTIADVFKCCDLDAMMLFFAKQACFKLMEHSPKQVKDNLIHRSAQI 978
            ||..|:||:|:..|.|.|.:::|||:...|:.|.:...|..|..:.:..|....:|.|::.....
Mouse   968 TSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAVCLLANMAVDRSVSSSLSDARDALVNAVVDP 1032

  Fly   979 LACYRKHCTS-PTSAGQLILPECLKLLPLYASCLLKNDAISGGSDMTLDDRSYVIQFILSMDLNQ 1042
            |:.|.....| |.|.  |..|..|||||||...|||..|...|:...||||.|.:..:.|..|..
Mouse  1033 LSAYSSAVASVPRST--LTAPSSLKLLPLYVLALLKQKAFRTGTSTRLDDRVYAMCQMKSQPLVH 1095

  Fly  1043 SVSYLYPRFIPIHNVVPE------ETDLPTP--VRCTHEKTQEDGAYILENGVHLFVWLGQALSP 1099
            .:..::|....|..:..|      :..:|.|  .:.:.||...:||::::.|...::|:|:....
Mouse  1096 LMKMIHPNLYRIDRLTDEGAIHVNDRVVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDS 1160

  Fly  1100 DFVQSVFGVQGLQQIALERFNIVPETPLAKRIHGILEQIMKERSRYMRITWLRQNDKLESV---- 1160
            :|:::|.|......|. ::...:||          |:.:..||:|.. :||||.:..|..|    
Mouse  1161 NFIENVLGYPDFASIP-QKMTHLPE----------LDTLPSERTRSF-VTWLRDSRPLSPVLHLV 1213

  Fly  1161 ----------FRHFLVEDRGTDGSASYVDFLCHMHKEI 1188
                      |:| |:||| |:.:.||.:||.|:.:::
Mouse  1214 KDESPAKTDFFQH-LLEDR-TEAALSYYEFLIHIQQQV 1249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec24CDNP_001259918.1 COG5028 395..1190 CDD:227361 252/821 (31%)
zf-Sec23_Sec24 522..559 CDD:282641 12/36 (33%)
Sec24-like 599..847 CDD:238756 86/250 (34%)
Sec23_BS 848..932 CDD:285301 30/83 (36%)
Sec23_helical 950..1043 CDD:282646 31/93 (33%)
Gelsolin 1061..1135 CDD:279020 15/75 (20%)
Sec24bNP_997092.1 DUF1421 27..>226 CDD:284607 60/227 (26%)
zf-Sec23_Sec24 585..621 CDD:282641 12/38 (32%)
Sec24-like 658..901 CDD:238756 86/250 (34%)
Sec23_BS 902..986 CDD:285301 30/83 (36%)
Sec23_helical 1001..1096 CDD:282646 31/96 (32%)
Gelsolin 1122..1197 CDD:279020 19/86 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53542
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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